Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F37C12.13a
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Query: F37C12.13a CE26424 status:Confirmed TR:Q20128 protein_id:AAC48298.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
RNase_PH 3' exoribonuclease family, domain 1 153.8 5.5e-43 1
RNase_PH_C 3' exoribonuclease family, domain 2 69.8 1.5e-18 1
UPF0113 Uncharacterised protein family (UPF0113) 3.8 9.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
UPF0113 1/1 1 19 [. 1 19 [. 3.8 9.2
RNase_PH 1/1 31 163 .. 1 153 [] 153.8 5.5e-43
RNase_PH_C 1/1 189 257 .. 1 90 [] 69.8 1.5e-18
Alignments of top-scoring domains:
UPF0113: domain 1 of 1, from 1 to 19: score 3.8, E = 9.2
*->mrvRkpkskElkLIekeLs<-*
mrv ++++ E +I+++L+
F37C12.13a 1 MRVQPVTNCEKAVILEALK 19
RNase_PH: domain 1 of 1, from 31 to 163: score 153.8, E = 5.5e-43
*->efRpieietGvlprQaaeGSalvelGddTkVlvtvtgeiepparrda
efR++++ +G a+ G a+++ G +TkV+++v++ei++p
F37C12.13a 31 EFRDVKLVVG-----AEVGTAICTIG-NTKVMAAVSAEIAEP----- 66
QrllslepplkgwleeeynaapfsvgefkrREaseGrptdrreveisrLi
s ++p+kg+++++++++p++ ++ ++ ++ + +e+ rL+
F37C12.13a 67 ----SSMRPHKGVINIDVDLSPMANYANEH------DRLGSKGMELIRLL 106
dRalrpsrlidleklcI.aGkpewqirvdvevLesdGstsdaainAaslA
+ ++r sr+id e+lcI+aGk w+irvdv +L++dGs++d+a++Aa+ A
F37C12.13a 107 ELIIRDSRCIDVEALCIrAGKEIWKIRVDVRILDEDGSLLDCACLAAITA 156
LadAgiP<-*
L++++ P
F37C12.13a 157 LQHFRRP 163
RNase_PH_C: domain 1 of 1, from 189 to 257: score 69.8, E = 1.5e-18
*->gpvaavtvGlvddqdeTEelkndnseeildlDptyeEdsllsdldlv
+++++ t+Gl d ++ +++ +Dpt++E++ + d+++v
F37C12.13a 189 HMPICTTIGLLDKGQ-----------IVV-IDPTDKETA-CLDGSIV 222
VagtedGkskrksivalqmdglGkgaglteelleealelAkeg<-*
Va++ kr++++al++++ + l+++++e++++lA+++
F37C12.13a 223 VACN-----KRREVCALHQST---NLILSTKQIERCVKLAMAR 257