Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F37C12.1
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Query:  F37C12.1  CE00742    status:Partially_confirmed TR:Q20124 protein_id:AAC48293.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
DUF572   Family of unknown function (DUF572)            550.5   1.1e-161   1
Prox1    Homeobox prospero-like protein (PROX1)           1.8        2.8   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Prox1      1/1      79    90 ..  1536  1547 .]     1.8      2.8
DUF572     1/1       3   322 ..     1   375 []   550.5 1.1e-161

Alignments of top-scoring domains:
Prox1: domain 1 of 1, from 79 to 90: score 1.8, E = 2.8
                   *->iFKSPNfLeeLl<-*
                      +F+ PN+L e
    F37C12.1    79    YFRCPNCLAEIT    90

DUF572: domain 1 of 1, from 3 to 322: score 550.5, E = 1.1e-161
                   *->MGERKglNKYYPPDFDPkKipSLNrYhgsHaLRERaKkpkngqlvIR
                      ++ERK+++KYYPPDFDP+Kip             RaK++kn+q+v+R
    F37C12.1     3    GTERKVFQKYYPPDFDPSKIP-------------RAKGQKNRQFVQR 36

                   fMmPfNirCdtCgNYIykGvKFNArKEkVgnEtYlgipIfRFyiKCtrCl
                   +M+PfN++C+tC++YIykG+KFN+++E++++EtYlg+++fRFy++C++Cl
    F37C12.1    37 VMTPFNMQCNTCHEYIYKGKKFNMKRETAEGETYLGLKLFRFYFRCPNCL 86

                   neitfkTDPkNsDYviEsGAtRnyerwDPklleeEqkrkeeqErkdeean
                   +eitfkTD +N+DY++E+GAtR++e++  kl++++qk+++eqE++d  a+
    F37C12.1    87 AEITFKTDLENCDYQNEHGATRLFEAV--KLYQDQQKQVDEQEAED--AK 132

                   LetDAMksLEnrtkdskrEmevlanLdeLkelnersRqastansfLRrqF
                      D+Mk+LE+rt++s++Eme+++nL++L+e+++++++
    F37C12.1   133 ---DPMKMLEKRTMQSRQEMEEMGNLEDLQESSRTKEC------------ 167

                   RvdvdalqemlekdqaLrakesqrekqqeEEdEddreaaallfktldege
                    +d+++++++++++    ++++qr+k++e+Ed+  r+a++l+++t+++++
    F37C12.1   168 -IDTIGFLSSTDPH----IAQAQRIKMMEDEDD--RMARELMGITSEGRI 210

                   dRrileesediieSrrssksssedellpsslksslrpkpsavlrkkpvtk
                   +Rri+++++       +s++++ed+++++++++s++p++s++l+++ ++k
    F37C12.1   211 ERRIKDDED-------NSDGADEDDKDIPGPSASVVPSTSSMLKPA-IPK 252

                   rsrddleekaratadkdsltqivldkkaKskpkkgngntqaatesskpas
                    ++dd+++++++++++d++++i+l+kkaK++        +++t+s+++++
    F37C12.1   253 LGMDDSGNSRKRNEQRDRFAGIKLIKKAKPS--------EPSTSSTASST 294

                   akaeepksssknsssLsslgdysssddd<-*
                   ++a++p++ss++ss+Ls+l+dy+s++d+
    F37C12.1   295 SSAPPPLPSSAASSGLSLLADYGSGSDS    322



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