Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F37C12.1
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Query: F37C12.1 CE00742 status:Partially_confirmed TR:Q20124 protein_id:AAC48293.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF572 Family of unknown function (DUF572) 550.5 1.1e-161 1
Prox1 Homeobox prospero-like protein (PROX1) 1.8 2.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Prox1 1/1 79 90 .. 1536 1547 .] 1.8 2.8
DUF572 1/1 3 322 .. 1 375 [] 550.5 1.1e-161
Alignments of top-scoring domains:
Prox1: domain 1 of 1, from 79 to 90: score 1.8, E = 2.8
*->iFKSPNfLeeLl<-*
+F+ PN+L e
F37C12.1 79 YFRCPNCLAEIT 90
DUF572: domain 1 of 1, from 3 to 322: score 550.5, E = 1.1e-161
*->MGERKglNKYYPPDFDPkKipSLNrYhgsHaLRERaKkpkngqlvIR
++ERK+++KYYPPDFDP+Kip RaK++kn+q+v+R
F37C12.1 3 GTERKVFQKYYPPDFDPSKIP-------------RAKGQKNRQFVQR 36
fMmPfNirCdtCgNYIykGvKFNArKEkVgnEtYlgipIfRFyiKCtrCl
+M+PfN++C+tC++YIykG+KFN+++E++++EtYlg+++fRFy++C++Cl
F37C12.1 37 VMTPFNMQCNTCHEYIYKGKKFNMKRETAEGETYLGLKLFRFYFRCPNCL 86
neitfkTDPkNsDYviEsGAtRnyerwDPklleeEqkrkeeqErkdeean
+eitfkTD +N+DY++E+GAtR++e++ kl++++qk+++eqE++d a+
F37C12.1 87 AEITFKTDLENCDYQNEHGATRLFEAV--KLYQDQQKQVDEQEAED--AK 132
LetDAMksLEnrtkdskrEmevlanLdeLkelnersRqastansfLRrqF
D+Mk+LE+rt++s++Eme+++nL++L+e+++++++
F37C12.1 133 ---DPMKMLEKRTMQSRQEMEEMGNLEDLQESSRTKEC------------ 167
RvdvdalqemlekdqaLrakesqrekqqeEEdEddreaaallfktldege
+d+++++++++++ ++++qr+k++e+Ed+ r+a++l+++t+++++
F37C12.1 168 -IDTIGFLSSTDPH----IAQAQRIKMMEDEDD--RMARELMGITSEGRI 210
dRrileesediieSrrssksssedellpsslksslrpkpsavlrkkpvtk
+Rri+++++ +s++++ed+++++++++s++p++s++l+++ ++k
F37C12.1 211 ERRIKDDED-------NSDGADEDDKDIPGPSASVVPSTSSMLKPA-IPK 252
rsrddleekaratadkdsltqivldkkaKskpkkgngntqaatesskpas
++dd+++++++++++d++++i+l+kkaK++ +++t+s+++++
F37C12.1 253 LGMDDSGNSRKRNEQRDRFAGIKLIKKAKPS--------EPSTSSTASST 294
akaeepksssknsssLsslgdysssddd<-*
++a++p++ss++ss+Ls+l+dy+s++d+
F37C12.1 295 SSAPPPLPSSAASSGLSLLADYGSGSDS 322