hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F37C12.3
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  F37C12.3  CE00740    status:Partially_confirmed TR:Q20122 protein_id:AAC48302.1

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N
--------   -----------                                  -----    ------- ---
pp-binding Phosphopantetheine attachment site            41.4    7.9e-10   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
pp-binding   1/1      78   148 ..     1    68 []    41.4  7.9e-10

Alignments of top-scoring domains:
pp-binding: domain 1 of 1, from 78 to 148: score 41.4, E = 7.9e-10
                   *->erlreiwaevLgvdpd...eigiddnFfeDLGgDSLkavelvarlee
                      +r+++ + + +  ++d+++   +d+++ +D G+DSL+ ve+v++le+
    F37C12.3    78    DRVLKAVRSWDRFPADkesLLKLDADLSKDFGFDSLDQVEIVMALED 124

                   elGvelpdtdlfehpTiraLaeyl<-*
                   e+G+e+p+ d ++ +Tir+   y+
    F37C12.3   125 EFGFEIPLQDSDKFKTIRDAFKYI    148

[DB home][top]