Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F37C4.6
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Query: F37C4.6 CE17049 phytoene desaturase status:Partially_confirmed TR:O61196 protein_id:AAB95172.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pyr_redox Pyridine nucleotide-disulphide oxidored 23.1 6.8e-06 1
Thi4 Thi4 family 21.7 7.6e-06 1
FAD_binding_3 FAD binding domain 20.4 2.1e-05 1
Amino_oxidase Flavin containing amine oxidoreductase 18.0 0.00041 1
GMC_oxred_N GMC oxidoreductase 15.0 0.003 1
GIDA Glucose inhibited division protein A 14.7 0.0034 1
DAO FAD dependent oxidoreductase 12.3 0.022 1
TrkA-N TrkA-N domain 5.3 5.6 1
UCR_14kD Ubiquinol-cytochrome C reductase comple 5.1 3.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
GIDA 1/1 15 43 .. 1 29 [. 14.7 0.0034
GMC_oxred_N 1/1 15 45 .. 1 33 [. 15.0 0.003
TrkA-N 1/1 16 45 .. 1 30 [. 5.3 5.6
FAD_binding_3 1/1 17 46 .. 1 30 [. 20.4 2.1e-05
DAO 1/1 15 47 .. 1 36 [. 12.3 0.022
pyr_redox 1/1 16 51 .. 1 53 [. 23.1 6.8e-06
Thi4 1/1 16 51 .. 29 66 .. 21.7 7.6e-06
Amino_oxidase 1/1 26 64 .. 1 44 [. 18.0 0.00041
UCR_14kD 1/1 64 92 .. 1 32 [. 5.1 3.4
Alignments of top-scoring domains:
GIDA: domain 1 of 1, from 15 to 43: score 14.7, E = 0.0034
*->fDVIVIGGGHAGcEAALAaARmGakTlLL<-*
+D+I+IGGGH G+ AA+ + + G k+ +L
F37C4.6 15 YDAIIIGGGHNGLTAAAYLTKAGKKVCVL 43
GMC_oxred_N: domain 1 of 1, from 15 to 45: score 15.0, E = 0.003
*->yDyIivGGGSAGcvlAaRLSNeDpntsVllLEa<-*
yD Ii+GGG G++ Aa L+ ++V++LE+
F37C4.6 15 YDAIIIGGGHNGLTAAAYLT--KAGKKVCVLER 45
TrkA-N: domain 1 of 1, from 16 to 45: score 5.3, E = 5.6
*->hfiviGlGrvGrsvakeLleeGhdVvvIDk<-*
i+iG G G++ a L++ G +V v ++
F37C4.6 16 DAIIIGGGHNGLTAAAYLTKAGKKVCVLER 45
FAD_binding_3: domain 1 of 1, from 17 to 46: score 20.4, E = 2.1e-05
*->VLIVGgGPaGLmlAllLaraGvrvvvvErh<-*
+I+GgG GL +A L +aG +v+v+Er+
F37C4.6 17 AIIIGGGHNGLTAAAYLTKAGKKVCVLERR 46
DAO: domain 1 of 1, from 15 to 47: score 12.3, E = 0.022
*->mdvvVIGgGViGlgtAldlalrGqgtlkvalvevrd<-*
+d ++IGgG +Gl+ A+ l + G +kv +e+r+
F37C4.6 15 YDAIIIGGGHNGLTAAAYLTKAG---KKVCVLERRH 47
pyr_redox: domain 1 of 1, from 16 to 51: score 23.1, E = 6.8e-06
*->dvvIIGgGpAGlaAAiraaragflGrkrlkvalvEkepplkrgtlGG
d +IIGgG+ Gl+AA ++ + +G kv + E++ ++ G
F37C4.6 16 DAIIIGGGHNGLTAAAYLTK---AG---KKVCVLERR------HVVG 50
TClNvg<-*
g
F37C4.6 51 -----G 51
Thi4: domain 1 of 1, from 16 to 51: score 21.7, E = 7.6e-06
*->DVvIVGAGpSGLtAAYyLAkkRPglKVaiiErslSpGG<-*
D +I G+G GLtAA yL k+ g KV+++Er+ GG
F37C4.6 16 DAIIIGGGHNGLTAAAYLTKA--GKKVCVLERRHVVGG 51
Amino_oxidase: domain 1 of 1, from 26 to 64: score 18.0, E = 0.00041
*->laGLaAAreLlraGf.VtvlEArdRvGGRvrtvrlkggdadgfli<-
GL+AA +L+ aG++V vlE r vGG + t++ +gf +
F37C4.6 26 --GLTAAAYLTKAGKkVCVLERRHVVGGAAVTEEI----VPGFRF 64
*
F37C4.6 - -
UCR_14kD: domain 1 of 1, from 64 to 92: score 5.1, E = 3.4
*->ilrlpalskLlvpIakffinlSgYrklGLrfD<-*
+r + l +Ll p+ ++ +n ++k GLr++
F37C4.6 64 FSRASYLLSLLRPVVMQELN---LKKFGLRYH 92