Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F37C4.6
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Query:  F37C4.6  CE17049   phytoene desaturase status:Partially_confirmed TR:O61196 protein_id:AAB95172.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
pyr_redox     Pyridine nucleotide-disulphide oxidored    23.1    6.8e-06   1
Thi4          Thi4 family                                21.7    7.6e-06   1
FAD_binding_3 FAD binding domain                         20.4    2.1e-05   1
Amino_oxidase Flavin containing amine oxidoreductase     18.0    0.00041   1
GMC_oxred_N   GMC oxidoreductase                         15.0      0.003   1
GIDA          Glucose inhibited division protein A       14.7     0.0034   1
DAO           FAD dependent oxidoreductase               12.3      0.022   1
TrkA-N        TrkA-N domain                               5.3        5.6   1
UCR_14kD      Ubiquinol-cytochrome C reductase comple     5.1        3.4   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
GIDA            1/1      15    43 ..     1    29 [.    14.7   0.0034
GMC_oxred_N     1/1      15    45 ..     1    33 [.    15.0    0.003
TrkA-N          1/1      16    45 ..     1    30 [.     5.3      5.6
FAD_binding_3   1/1      17    46 ..     1    30 [.    20.4  2.1e-05
DAO             1/1      15    47 ..     1    36 [.    12.3    0.022
pyr_redox       1/1      16    51 ..     1    53 [.    23.1  6.8e-06
Thi4            1/1      16    51 ..    29    66 ..    21.7  7.6e-06
Amino_oxidase   1/1      26    64 ..     1    44 [.    18.0  0.00041
UCR_14kD        1/1      64    92 ..     1    32 [.     5.1      3.4

Alignments of top-scoring domains:
GIDA: domain 1 of 1, from 15 to 43: score 14.7, E = 0.0034
                   *->fDVIVIGGGHAGcEAALAaARmGakTlLL<-*
                      +D+I+IGGGH G+ AA+ + + G k+ +L
     F37C4.6    15    YDAIIIGGGHNGLTAAAYLTKAGKKVCVL    43

GMC_oxred_N: domain 1 of 1, from 15 to 45: score 15.0, E = 0.003
                   *->yDyIivGGGSAGcvlAaRLSNeDpntsVllLEa<-*
                      yD Ii+GGG  G++ Aa L+     ++V++LE+
     F37C4.6    15    YDAIIIGGGHNGLTAAAYLT--KAGKKVCVLER    45

TrkA-N: domain 1 of 1, from 16 to 45: score 5.3, E = 5.6
                   *->hfiviGlGrvGrsvakeLleeGhdVvvIDk<-*
                        i+iG G  G++ a  L++ G +V v ++
     F37C4.6    16    DAIIIGGGHNGLTAAAYLTKAGKKVCVLER    45

FAD_binding_3: domain 1 of 1, from 17 to 46: score 20.4, E = 2.1e-05
                   *->VLIVGgGPaGLmlAllLaraGvrvvvvErh<-*
                       +I+GgG  GL +A  L +aG +v+v+Er+
     F37C4.6    17    AIIIGGGHNGLTAAAYLTKAGKKVCVLERR    46

DAO: domain 1 of 1, from 15 to 47: score 12.3, E = 0.022
                   *->mdvvVIGgGViGlgtAldlalrGqgtlkvalvevrd<-*
                      +d ++IGgG +Gl+ A+ l + G   +kv  +e+r+
     F37C4.6    15    YDAIIIGGGHNGLTAAAYLTKAG---KKVCVLERRH    47

pyr_redox: domain 1 of 1, from 16 to 51: score 23.1, E = 6.8e-06
                   *->dvvIIGgGpAGlaAAiraaragflGrkrlkvalvEkepplkrgtlGG
                      d +IIGgG+ Gl+AA ++ +   +G    kv + E++      ++ G
     F37C4.6    16    DAIIIGGGHNGLTAAAYLTK---AG---KKVCVLERR------HVVG 50

                   TClNvg<-*
                        g
     F37C4.6    51 -----G    51

Thi4: domain 1 of 1, from 16 to 51: score 21.7, E = 7.6e-06
                   *->DVvIVGAGpSGLtAAYyLAkkRPglKVaiiErslSpGG<-*
                      D +I G+G  GLtAA yL k+  g KV+++Er+   GG
     F37C4.6    16    DAIIIGGGHNGLTAAAYLTKA--GKKVCVLERRHVVGG    51

Amino_oxidase: domain 1 of 1, from 26 to 64: score 18.0, E = 0.00041
                   *->laGLaAAreLlraGf.VtvlEArdRvGGRvrtvrlkggdadgfli<-
                        GL+AA +L+ aG++V vlE r  vGG + t++      +gf +
     F37C4.6    26    --GLTAAAYLTKAGKkVCVLERRHVVGGAAVTEEI----VPGFRF   64

                   *

     F37C4.6     -   -

UCR_14kD: domain 1 of 1, from 64 to 92: score 5.1, E = 3.4
                   *->ilrlpalskLlvpIakffinlSgYrklGLrfD<-*
                       +r + l +Ll p+ ++ +n   ++k GLr++
     F37C4.6    64    FSRASYLLSLLRPVVMQELN---LKKFGLRYH    92



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