Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F38A5.3
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Query: F38A5.3 CE28303 locus:lec-11 status:Confirmed TR:Q94215 protein_id:AAK68382.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Gal-bind_lectin Galactoside-binding lectin 26.2 2.2e-06 1
PT PT repeat 4.6 9.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Gal-bind_lectin 1/1 11 140 .. 1 139 [] 26.2 2.2e-06
PT 1/1 190 210 .. 1 22 [. 4.6 9.8
Alignments of top-scoring domains:
Gal-bind_lectin: domain 1 of 1, from 11 to 140: score 26.2, E = 2.2e-06
*->pglvalnlglkpGktltVkGtVapknakrFavNlgkgskEEndlvLH
p + ++ +g++ +++++ G+V + +F v++ ++ n ++LH
F38A5.3 11 PLTTPIYEGMREHSSVEIHGEVFQGPQGGFTVEFPTK----NGVALH 53
fNPRFneaHGDqntvVcNSkenGDNeWGtEqReaafPFqaGqpFeisIsv
+ +R + ++ qn++V N ++ G W E+ + ++ G pF +I++
F38A5.3 54 ISVRMGSYG--QNVIVFNHLQRG--RWHREEH-HQNTIMFGRPFCMRIHN 98
eedkfkVkvndghefeFphRlkleavqyLgikGDikltsikf<-*
e k+ ++v + h ++ h + ++ ++ ++GD ++ +i f
F38A5.3 99 EHRKYSIHVDGHHIGHYHHHKCPKRIVAMTVRGDLRVGKIHF 140
PT: domain 1 of 1, from 190 to 210: score 4.6, E = 9.8
*->qPTaqPTaqPTvqPTgqPtaqP<-*
qP++qP P+vqP + Pta P
F38A5.3 190 QPMVQP-IYPSVQPIVYPTATP 210