Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F38B2.4
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Query: F38B2.4 CE02218 adenylate kinase status:Confirmed SW:Q20140 protein_id:CAA90364.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ADK Adenylate kinase 266.0 4.9e-76 1
ACPS 4'-phosphopantetheinyl transferase su 4.3 7.6 1
Thymidylate_kin Thymidylate kinase 2.6 4.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Thymidylate_kin 1/1 25 44 .. 1 20 [. 2.6 4.6
ACPS 1/1 89 105 .. 59 75 .] 4.3 7.6
ADK 1/1 25 182 .. 1 152 [] 266.0 4.9e-76
Alignments of top-scoring domains:
Thymidylate_kin: domain 1 of 1, from 25 to 44: score 2.6, E = 4.6
*->iEGiDGaGKTTqaelLkerL<-*
i G G+GK Tq++++++++
F38B2.4 25 IVGGPGSGKGTQCDKIVAKY 44
ACPS: domain 1 of 1, from 89 to 105: score 4.3, E = 7.6
*->KEAvfKAlGtgigrgla<-*
KEA +KA +g+++ l
F38B2.4 89 KEAMLKAIEKGSKGFLI 105
ADK: domain 1 of 1, from 25 to 182: score 266.0, E = 4.9e-76
RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
*->llGpPGaGKGTQaekIvkkygivHLSTGDlLRaevksgTelGkeaKe
++G+PG+GKGTQ+ kIv kyg++HLS+GDlLR+evksg+++G ++ +
F38B2.4 25 IVGGPGSGKGTQCDKIVAKYGLTHLSSGDLLRDEVKSGSPRGAQLTA 71
RF xxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxx
yMdkGeLVPDevvvglvkerleqn.ndcknGFLLDGFPRtvpQAeaLeem
+M+ G LVP+evv++lvke++ ++ ++GFL+DG+PR+v+Q++ +e
F38B2.4 72 IMESGALVPLEVVLDLVKEAMLKAiEKGSKGFLIDGYPREVAQGQQFES- 120
RF xxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxx
LeeagikldaVleldVpdevLveRltg.........DneEtvkkRLetYh
++++ ++Vl++dV +e+Lv+Rl+ + +++++ +Dn++t+kkRL t+
F38B2.4 121 ---EIQEAKLVLFFDVAEETLVKRLLHraqtsgradDNADTIKKRLHTFV 167
RF xxxxxxxxxxxxxxx
kqTePvIdyYkkkgk<-*
+ T+Pv+dyY++kgk
F38B2.4 168 TSTAPVVDYYESKGK 182