Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F38B7.1b
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: F38B7.1b CE31934 TIS11B protein like status:Confirmed TR:Q20155
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and simil 88.6 4.3e-25 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
zf-CCCH 1/2 158 184 .. 1 27 [] 48.4 6.4e-13
zf-CCCH 2/2 196 222 .. 1 27 [] 47.9 9.1e-13
Alignments of top-scoring domains:
zf-CCCH: domain 1 of 2, from 158 to 184: score 48.4, E = 6.4e-13
*->yktelCrffsrtGtCkyGdrCkFaHge<-*
yktelCr ++ +G+C+yG+rC++aHge
F38B7.1b 158 YKTELCRSWMDHGRCNYGERCQYAHGE 184
zf-CCCH: domain 2 of 2, from 196 to 222: score 47.9, E = 9.1e-13
*->yktelCrffsrtGtCkyGdrCkFaHge<-*
ykte C+ f+++G+C+yG+rC+F+H e
F38B7.1b 196 YKTEACQSFHQSGYCPYGPRCHFIHNE 222