Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F38B7.5
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Query: F38B7.5 CE05829 Ubiquitin carboxyl-terminal hydrolases family 2, Ubiquitin carboxyl-terminal hydrolases family 2 status:Partially_con
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
UCH Ubiquitin carboxyl-terminal hydrolase 246.3 1.6e-85 1
OTU OTU-like cysteine protease 91.7 1.5e-23 1
LigB Catalytic LigB subunit of aromatic ring 6.4 1.1 1
Pox_Rap94 RNA polymerase-associated transcription 3.1 4.1 1
Herpes_glycop Herpesvirus glycoprotein M 2.7 7.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Herpes_glycop 1/1 45 91 .. 354 412 .] 2.7 7.5
Pox_Rap94 1/1 496 513 .. 815 832 .] 3.1 4.1
LigB 1/1 565 579 .. 327 341 .] 6.4 1.1
OTU 1/1 560 674 .. 1 139 [] 91.7 1.5e-23
UCH 1/1 211 778 .. 1 456 [] 246.3 1.6e-85
Alignments of top-scoring domains:
Herpes_glycop: domain 1 of 1, from 45 to 91: score 2.7, E = 7.5
*->fvrmpksrYkalvskarvRssmrSrrRpsplspkvrarrrnepslnq
f+ + k++ +a +sk++ p+++++ + r+++ s +
F38B7.5 45 FIEENKNSMQATQSKRP------------PSAASGSSSRTEKSSVRP 79
aprasylreees<-*
+ ++++lre+ +
F38B7.5 80 IFNEQILREDHE 91
Pox_Rap94: domain 1 of 1, from 496 to 513: score 3.1, E = 4.1
*->IdENitrIkeLYminFNN<-*
I E ++ keLY+ +F+N
F38B7.5 496 IVEDVKKRKELYFNIFSN 513
LigB: domain 1 of 1, from 565 to 579: score 6.4, E = 1.1
*->vveygaipesiagfg<-*
+++y+ai+++i+g++
F38B7.5 565 NCFYRAISWWITGVQ 579
OTU: domain 1 of 1, from 560 to 674: score 91.7, E = 1.5e-23
*->vpgDGnClfhaiafllgldqdPkldielshmeLraevvkqvesnrvk
+ +DGnC+++ai+++++++q +hm +r++v+k++++n+
F38B7.5 560 ITPDGNCFYRAISWWITGVQ-------SHHMIFREAVGKHLKKNELM 599
fePyiedvaeyfdedaveaklsqeyikniekpnaWGeeieisalsallrv
f + ++ + + y n++ +++W++ ei a++ l+
F38B7.5 600 FK------------KYCHNEIYEKYVENAMRDGVWATTCEIFAMANMLN- 636
sveivvy...dtktgrtakfkpgpekkskkivlililllegeHfd<-*
vei+ y +++ + +++++++++p+k++ ++l ++++H++
F38B7.5 637 -VEIITYlgdSGWVPHSPQNNYPPRKGA------IYLKNTNMHYE 674
UCH: domain 1 of 1, from 211 to 778: score 246.3, E = 1.6e-85
*->egpvGLvNlGNTCYmNSvLQcLfhipelrdyllsn.........rhy
+ + LvN+GN+CY NS++Q+ +++++l+ +++++ + +++ + +
F38B7.5 211 HENRQLVNTGNSCYYNSTMQAVSSCNPLVIRCEQLyrmvrdnieLFD 257
lprinnsnplgskgqllcaladlfkslqsnqyssppseaelslfeSnavs
++ +n++ ++++++l++++k + +++
F38B7.5 258 DSMNNDQ---ADIKRKYIVLQNFLKVVICLGWHF---------------- 288
alnk.nsk.p.e.esisPtqflktlgkinpsFselegykliqQqDAqEfl
nk+n++++ e + ++ q ++++gkin++F+ +++ QqDA+Efl
F38B7.5 289 --NKrNEGkSiElRRYDLLQYRQNVGKINEEFN---NDD---QQDAHEFL 330
lfLLdgLh..........EDlNrvakkpyneehepgldlaleeeeadelk
l+L+ ++++ + +++ + +++v+ ++
F38B7.5 331 LTLIGAVDdamgvmsknvKTIDNVGITLN--------------------- 359
dseaseeawknkstrneslisdlFqGqlesrikCaleCgkvsvtyepFld
+ + F++ +e+ ++C ++C +++ ++++ +d
F38B7.5 360 -------------------PARAFKIDVETMYVC-QGCSNEELKVDSRND 389
LslpikpkeasdspksLeecLkaFtkeEiLKviegenkyyCdkcgkkqea
L + + +
F38B7.5 390 LGVSV------------------------I-------------------- 395
sKklkisrLPpiLtihLkRFsydgetssnim.KindrvefPleeLDlspy
+L+i+LkR++ +g++ +++m+K ++rve + LD+s++
F38B7.5 396 -----------CLIINLKRYELEGQGPPFSMkKKSCRVEPSFK-LDVSSL 433
ln................................................
n ++ ++++ ++++ +++++ ++++++ + ++++ + ++++ +++
F38B7.5 434 GNfppvehpemfenkeysttepvnsedsrlaeittddahfndsrvsgrll 483
..................................................
++ +++ ++ + ++ +++++ + +++++ ++ ++ + +++++++
F38B7.5 484 ggadeemsqcsvivedvkkrkelyfnifsnekdfddildemginngenqk 533
..................................................
+ + +++ ++++++ + + ++ +++ +++++ + + ++ ++++
F38B7.5 534 rfhferhitgppskmyqfqlpgatrgitpdgncfyraiswwitgvqshhm 583
..................................................
++ +++ ++++ ++ +++ ++ ++ +++ ++ + +
F38B7.5 584 ifreavgkhlkknelmfkkychneiyekyvenamrdgvwattceifaman 633
...........................q.k.tnkeraa.aean.sl.eee
+ + + ++++ +++++++ ++++++ ++k++++++e ++sl++++
F38B7.5 634 mlnveiitylgdsgwvphspqnnypprKgAiYLKNTNMhYEPTtSLrKNS 683
.qqsvnadegnnq.ee.seestksqeegenpptkYeLvaVvvHsGsslsg
++ s++++e +n +++++e ++ ++ ++++ p++Y+LvaVv+H G s++
F38B7.5 684 pERSPMKKENTNGsSMhDELDENDYLKSDIHPGTYSLVAVVCHLGDSPNK 733
GHYiayikk.ldnnkWykFDDsvetVgdwkvvsvvseeevlkesgggtat
GHY+ay+k+ +n+ W++++D+ ++ + vs+++v + +++
F38B7.5 734 GHYVAYTKElYKNSSWLRCSDD--NI------YAVSKNDVSEAIRSS--- 772
seskrlkryrwAYiLFY<-*
+Y+ FY
F38B7.5 773 -----------GYLMFY 778