hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F38B7.1a
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Query:  F38B7.1a  CE31933   Zinc finger C-x8-C-x5-C-x3-H type (and similar). status:Confirmed TR:Q20155 protein_id:CAA98475.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and simil    88.6    4.3e-25   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-CCCH    1/2     199   225 ..     1    27 []    48.4  6.4e-13
zf-CCCH    2/2     237   263 ..     1    27 []    47.9  9.1e-13

Alignments of top-scoring domains:
zf-CCCH: domain 1 of 2, from 199 to 225: score 48.4, E = 6.4e-13
                   *->yktelCrffsrtGtCkyGdrCkFaHge<-*
                      yktelCr ++ +G+C+yG+rC++aHge
    F38B7.1a   199    YKTELCRSWMDHGRCNYGERCQYAHGE    225

zf-CCCH: domain 2 of 2, from 237 to 263: score 47.9, E = 9.1e-13
                   *->yktelCrffsrtGtCkyGdrCkFaHge<-*
                      ykte C+ f+++G+C+yG+rC+F+H e
    F38B7.1a   237    YKTEACQSFHQSGYCPYGPRCHFIHNE    263

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