Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F38E11.7
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  F38E11.7  CE10056  locus:wrt-3 cGMP-gated cation channel protein status:Partially_confirmed TR:Q20170 protein_id:CAA92775.1

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
ion_trans    Ion transport protein                       74.9    3.8e-19   1
cNMP_binding Cyclic nucleotide-binding domain            62.5    2.6e-16   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
ion_trans      1/1      96   347 ..     1   228 []    74.9  3.8e-19
cNMP_binding   1/1     445   538 ..     1   120 []    62.5  2.6e-16

Alignments of top-scoring domains:
ion_trans: domain 1 of 1, from 96 to 347: score 74.9, E = 3.8e-19
                   *->ileildyvftviFtlEmllkiialgfklhsr.........iprkYlr
                      il  ++++f+++F+++++l+ + l f   +++   ++ ++++r+Y++
    F38E11.7    96    ILP-INIAFDTVFLFDIILRSM-LSFY--EDgvlitsfseTWRHYVH 138

                   spwnilDflvvlpslislilflsgggsvklirlreslflalsevsygils
                   s+++ +D+l++ p+  +++l +
    F38E11.7   139 SFYFAIDLLAIFPF--DYLLIR--------------------------KT 160

                   vlrllRllRvLRllrllrrapglfefelrtlGWklqslgrslkslfnlll
                   ++ + Rl R   +l++ r a       + +     + l++  +sl +++
    F38E11.7   161 SAAFCRLNR---FLKIYRIANF-----IAQS---YGKLTQVTISLSKIFT 199

                   llllllfifaiigvqlfggelnkcc.........................
                    ++ll+++ a++++++  + +++++++ + + ++++  +++ ++++ ++
    F38E11.7   200 ACFLLFHVNACVFYIISVNSDTSSWdgvnatfdddeylpwpytpekitda 249

                   .......................................npingntnFdn
                      ++++ +++ ++    ++  +++  +  + + +++ +   n+
    F38E11.7   250 yfvgcdgrtdcynpyfyydearedhlvelyhfwrtdnrtHIYNFSQFTKE 299

                   fgeaflwlFqtlTteGwgdimpdtlagtvlgkiyfvifiilggflllNlf
                   +  +++w+  t+Tt   ++  p+    t l   +  i+  l+g+ll++++
    F38E11.7   300 YTLSMYWSAMTMTTL-GEQPAPN----TSLQNAFE-IVNTLAGLLLFAVI 343

                   iavi<-*
                   ++ i
    F38E11.7   344 MGSI    347

cNMP_binding: domain 1 of 1, from 445 to 538: score 62.5, E = 2.6e-16
                   *->aleersypaGeviirqGdpgdsfYivlsGevevykltedGartpevs
                       le++++++G+v+i++G+  +s++i+++G++  ++
    F38E11.7   445    LLEPHYFCPGDVVIEKGQLCSSMFIIVCGQMVEIT------------ 479

                   qkqdtreqvvatlgpGdfFGElalltndgnknavlpsldqgaprtatvrA
                        ++ +++++ +G+++G+  l++ +++ n        ++++  +v++
    F38E11.7   480 -----EDNEIDHF-EGEILGDVNLIWFNNHLN--------HNRHQHNVIS 515

                   ltdsellrldredFrrllqkype<-*
                      s+++ l+r+dF  +l  y
    F38E11.7   516 SAFSQIHMLSRDDFFKVLSSYDP    538



[DB home][top]