Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F38E11.7
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Query: F38E11.7 CE10056 locus:wrt-3 cGMP-gated cation channel protein status:Partially_confirmed TR:Q20170 protein_id:CAA92775.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ion_trans Ion transport protein 74.9 3.8e-19 1
cNMP_binding Cyclic nucleotide-binding domain 62.5 2.6e-16 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ion_trans 1/1 96 347 .. 1 228 [] 74.9 3.8e-19
cNMP_binding 1/1 445 538 .. 1 120 [] 62.5 2.6e-16
Alignments of top-scoring domains:
ion_trans: domain 1 of 1, from 96 to 347: score 74.9, E = 3.8e-19
*->ileildyvftviFtlEmllkiialgfklhsr.........iprkYlr
il ++++f+++F+++++l+ + l f +++ ++ ++++r+Y++
F38E11.7 96 ILP-INIAFDTVFLFDIILRSM-LSFY--EDgvlitsfseTWRHYVH 138
spwnilDflvvlpslislilflsgggsvklirlreslflalsevsygils
s+++ +D+l++ p+ +++l +
F38E11.7 139 SFYFAIDLLAIFPF--DYLLIR--------------------------KT 160
vlrllRllRvLRllrllrrapglfefelrtlGWklqslgrslkslfnlll
++ + Rl R +l++ r a + + + l++ +sl +++
F38E11.7 161 SAAFCRLNR---FLKIYRIANF-----IAQS---YGKLTQVTISLSKIFT 199
llllllfifaiigvqlfggelnkcc.........................
++ll+++ a++++++ + +++++++ + + ++++ +++ ++++ ++
F38E11.7 200 ACFLLFHVNACVFYIISVNSDTSSWdgvnatfdddeylpwpytpekitda 249
.......................................npingntnFdn
++++ +++ ++ ++ +++ + + + +++ + n+
F38E11.7 250 yfvgcdgrtdcynpyfyydearedhlvelyhfwrtdnrtHIYNFSQFTKE 299
fgeaflwlFqtlTteGwgdimpdtlagtvlgkiyfvifiilggflllNlf
+ +++w+ t+Tt ++ p+ t l + i+ l+g+ll++++
F38E11.7 300 YTLSMYWSAMTMTTL-GEQPAPN----TSLQNAFE-IVNTLAGLLLFAVI 343
iavi<-*
++ i
F38E11.7 344 MGSI 347
cNMP_binding: domain 1 of 1, from 445 to 538: score 62.5, E = 2.6e-16
*->aleersypaGeviirqGdpgdsfYivlsGevevykltedGartpevs
le++++++G+v+i++G+ +s++i+++G++ ++
F38E11.7 445 LLEPHYFCPGDVVIEKGQLCSSMFIIVCGQMVEIT------------ 479
qkqdtreqvvatlgpGdfFGElalltndgnknavlpsldqgaprtatvrA
++ +++++ +G+++G+ l++ +++ n ++++ +v++
F38E11.7 480 -----EDNEIDHF-EGEILGDVNLIWFNNHLN--------HNRHQHNVIS 515
ltdsellrldredFrrllqkype<-*
s+++ l+r+dF +l y
F38E11.7 516 SAFSQIHMLSRDDFFKVLSSYDP 538