Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F39B2.6
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Query: F39B2.6 CE16012 locus:rps-26 40S ribosomal protein S26 status:Confirmed TR:O45499 protein_id:CAB07387.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Ribosomal_S26e Ribosomal protein S26e 222.4 6.6e-63 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Ribosomal_S26e 1/1 1 117 [] 1 114 [] 222.4 6.6e-63
Alignments of top-scoring domains:
Ribosomal_S26e: domain 1 of 1, from 1 to 117: score 222.4, E = 6.6e-63
*->mtkKRrnnGRnKkgRGHvkpiRCtnCarcvPKDKAiKrfviRnivEa
mt+KRrn GRnKk+RGHv +iRCtnC rc+PKDKAiK+fv+RnivEa
F39B2.6 1 MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEA 47
aAvRDiseasvydeYvlPKlYaklhyCvsCAiHskivRvRsREaRkdRaP
aAvRDi +as y +Y+lPKlY klhyC++CAiHsk+vR+RsREaR+dR P
F39B2.6 48 AAVRDIGDASAYTQYALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNP 97
PeRfrpkeeakk...vapak<-*
P+Rf ++ +a +++ p++
F39B2.6 98 PPRFGQRAAAARpgaPGPRP 117