Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F39H2.2
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Query: F39H2.2 CE16017 locus:cyp-14 peptidylprolyl isomerase status:Partially_confirmed TR:O18161 protein_id:CAB10726.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pro_isomerase Cyclophilin type peptidyl-prolyl cis-tr 78.1 1.2e-21 1
rrm RNA recognition motif. (a.k.a. RRM, RBD 60.1 3.1e-16 1
Utp21 Utp21 specific WD40 associated putative 2.3 9.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Utp21 1/1 89 99 .. 266 278 .] 2.3 9.3
pro_isomerase 1/1 1 163 [. 1 180 [] 78.1 1.2e-21
rrm 1/1 241 312 .. 1 77 [] 60.1 3.1e-16
Alignments of top-scoring domains:
Utp21: domain 1 of 1, from 89 to 99: score 2.3, E = 9.3
*->vgyCsGVvaflrn<-*
++ +G+v+f+ n
F39H2.2 89 TR--MGIVSFVNN 99
pro_isomerase: domain 1 of 1, from 1 to 163: score 78.1, E = 1.2e-21
*->kvyFDitiggkplGrIvfeLfgdvvPkTaeNFraLctgekgfgkklf
++i++ lG+ + Lf + P NF++Lc k++
F39H2.2 1 -MAVLIETT---LGDLIIDLFVKERPRCSLNFLKLC---KKKY---- 36
YkGstFHRVIpnFMiQGGDftagnqGtGGkSIYG.......ekFkDEnf.
Y+ + FH + n + Q GD ++g+ G+GG+S+Y + ++++ +F+ E +
F39H2.2 37 YNLNQFHSIERNYVAQTGD-PTGT-GKGGESVYSdmygeqgRYFEREDLp 84
nlkHdrhepGtLSMANaGdpnTNGSQFFItTvk.tpwLDGKHVvdfGYAV
+ H+r G++S N G n GSQFFIt ++ ++LD H+ +
F39H2.2 85 KMRHTR--MGIVSFVNNG-DNMLGSQFFITLGEnLDYLDDQHT------I 125
FGkVveGmdVVkkIenvgtdeyGksgdkpskeVkIadcgqle<-*
FG+V+eG++ +k+ + d ++++p k+++I+ +l+
F39H2.2 126 FGQVTEGLETLEKLNEQLAD----TNNRPFKDIRISHTIVLD 163
rrm: domain 1 of 1, from 241 to 312: score 60.1, E = 3.1e-16
*->lfVgNLppdvteedLkdlFskfGpivsikivkDhiekpketgkskGf
lfV L+p +t+edL+ +Fs fG+i++++iv+D + g s +
F39H2.2 241 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRD-----RRSGDSLQY 282
aFVeFeseedAekAlealnGkelggrklrv<-*
aF+eF++ + e A ++++ +++r+++v
F39H2.2 283 AFIEFDNAKSCEQAFFKMDNVLIDDRRIHV 312