Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F40A3.3
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Query: F40A3.3 CE10146 phosphatidylethanolamine binding protein status:Partially_confirmed SW:O16264 protein_id:AAB65322.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PBP Phosphatidylethanolamine-binding protein 242.9 8.2e-70 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PBP 1/1 54 207 .. 1 202 [] 242.9 8.2e-70
Alignments of top-scoring domains:
PBP: domain 1 of 1, from 54 to 207: score 242.9, E = 8.2e-70
*->afdpsgnlpvkYssgvnkgvnlGnpLtpngvpskPtfkftkvswepv
+ ps+ ++vk++sg +++nlGn+Ltp++v+ +P +v+w+++
F40A3.3 54 SNPPSKVVSVKFNSG--VEANLGNVLTPTQVKDTP-----EVKWDAE 93
dlaksytLvmtDPDAPsrsgpkyrewlHWlVvNIpgtvtelpesatdkRe
+ +++ytL+ tDPDAPsr++p yrew+HWlVvNIpg
F40A3.3 94 P-GALYTLIKTDPDAPSRKEPTYREWHHWLVVNIPG-------------- 128
vqtndivqGtnlsgsnlleedkselsNilidYiGPgPPKgtGlHRYvFlv
ndi++G +ls +YiG gPP++tGlHRYv+l+
F40A3.3 129 ---NDIAKGDTLS-----------------EYIGAGPPPKTGLHRYVYLI 158
YkQpkridssepnaLditklnlgdgrpgfdlrkfmkehiLglpvaHWWgg
YkQ++ri+++e++ L + +gd r+g+++++f+ +h+Lg+pv+ g+
F40A3.3 159 YKQSGRIEDAEHGRLT---NTSGDKRGGWKAADFVAKHKLGAPVF---GN 202
fyraq<-*
+++a+
F40A3.3 203 LFQAE 207