hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F40F8.9
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Query:  F40F8.9  CE05848   Yeast J0714 like status:Predicted TR:Q20229 protein_id:CAA93263.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
Sm       Sm protein                                      67.6    8.8e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Sm         1/1      12    80 ..     1    55 []    67.6  8.8e-18

Alignments of top-scoring domains:
Sm: domain 1 of 1, from 12 to 80: score 67.6, E = 8.8e-18
                   *->sfLkklidkrVlVeLknGreirGtLkgfDqfmNlvLddveEtl....
                        L +++dk++lV+L++Gr+++G L+++Dqf Nl+L+dv+E+   ++
     F40F8.9    12    ISLFEQLDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTfvek 58

                   ..........liRGnnvvlisp<-*
                      +++++  liRG+nv l ++
     F40F8.9    59 yfcetgqgfmLIRGENVELAGE    80

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