hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F40H3.4
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Query:  F40H3.4  CE19865    status:Partially_confirmed TR:Q9TZK1 protein_id:AAC67430.1

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N
--------  -----------                                   -----    ------- ---
Fork_head Fork head domain                              112.1    1.1e-29   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
Fork_head   1/1      56   127 ..     1    71 [.   112.1  1.1e-29

Alignments of top-scoring domains:
Fork_head: domain 1 of 1, from 56 to 127: score 112.1, E = 1.1e-29
                   *->KPPYSYiaLItmAIqqySpekrLtLseIYkfImdrFPYYRqnk.qgW
                      KPPYSY++LI +AI++ +p+k+ tL+eIY+fI  +F +YR+n +++W
     F40H3.4    56    KPPYSYSQLIRLAIED-TPDKKCTLAEIYSFIAHNFQFYRENRnSSW 101

                   QNSIRHNLSLNkcFiKVpR.spdkpG<-*
                   +NSIRHNLSLNk F  ++++++d+ G
     F40H3.4   102 KNSIRHNLSLNKQFSRIEKtDGDRRG    127

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