Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F41B5.6
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  F41B5.6  CE10226    status:Partially_confirmed TR:O16669 protein_id:AAG24103.1

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
Peptidase_A16   Peptidase family A16                    445.2   5.7e-130   1
Phosphoesterase Phosphoesterase family                    8.4      0.054   1
LIP             Secretory lipase                          2.3          8   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
LIP               1/1     184   214 ..   272   302 .]     2.3        8
Peptidase_A16     1/1     141   311 ..     1   172 []   445.2 5.7e-130
Phosphoesterase   1/1     520   559 ..   487   526 .]     8.4    0.054

Alignments of top-scoring domains:
LIP: domain 1 of 1, from 184 to 214: score 2.3, E = 8
                   *->LLnHltealvgapaAltWlddRFsGkpavsG<-*
                      ++ Hl+++ + +p+A   l +RF++ + + +
     F41B5.6   184    MIQHLPLTAANYPVARKLLKERFDNTTILRH    214

Peptidase_A16: domain 1 of 1, from 141 to 311: score 445.2, E = 5.7e-130
                   *->FsGditeyhSFmElFnSLiDslPIadiqKlnYLksALqGpAatmiqH
                      FsGdi++++SFmElFn+LiDs+PIa+i+K++YLksALqG+Aa+miqH
     F41B5.6   141    FSGDILHFQSFMELFNTLIDSQPIAEIFKFYYLKSALQGNAARMIQH 187

                   LpLteaNYdvARelLkEqYGntartRHhLlReLQnLPsmnnnhsvsqlQe
                   LpLt+aNY+vAR+lLkE+++nt+++RH+LlR+LQ++++++nnhs++q+Q+
     F41B5.6   188 LPLTAANYPVARKLLKERFDNTTILRHLLLRKLQEIQPVPNNHSLQQIQQ 237

                   LWteasrIFrQLeniqpdlDNpllAnIIeqKLPkRYikriytGknldrey
                   LWte+++IF+QL++iqpd+DN+++AnII++KLP+RYikriy+G ++d+++
     F41B5.6   238 LWTECVSIFKQLCKIQPDADNTMIANIITSKLPRRYIKRIYFG-HRDCDF 286

                   nAseLlakvrefIkaeliVdTIaNd<-*
                   +Ase+l++vr+fI++++iVdTIaNd
     F41B5.6   287 LASEILEMVRTFIETDFIVDTIAND    311

Phosphoesterase: domain 1 of 1, from 520 to 559: score 8.4, E = 0.054
                   *->psstfdHtSvLafiekrFgLpsLpnisawrdavagdltst<-*
                      p++++d++++L f++ ++  + Lp++s+w+ ++++ +++
     F41B5.6   520    PTTLLDQATILSFLSMLYVFSILPGLSTWNGLPIWLQWNI    559



[DB home][top]