Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F41B5.6
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Query: F41B5.6 CE10226 status:Partially_confirmed TR:O16669 protein_id:AAG24103.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Peptidase_A16 Peptidase family A16 445.2 5.7e-130 1
Phosphoesterase Phosphoesterase family 8.4 0.054 1
LIP Secretory lipase 2.3 8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
LIP 1/1 184 214 .. 272 302 .] 2.3 8
Peptidase_A16 1/1 141 311 .. 1 172 [] 445.2 5.7e-130
Phosphoesterase 1/1 520 559 .. 487 526 .] 8.4 0.054
Alignments of top-scoring domains:
LIP: domain 1 of 1, from 184 to 214: score 2.3, E = 8
*->LLnHltealvgapaAltWlddRFsGkpavsG<-*
++ Hl+++ + +p+A l +RF++ + + +
F41B5.6 184 MIQHLPLTAANYPVARKLLKERFDNTTILRH 214
Peptidase_A16: domain 1 of 1, from 141 to 311: score 445.2, E = 5.7e-130
*->FsGditeyhSFmElFnSLiDslPIadiqKlnYLksALqGpAatmiqH
FsGdi++++SFmElFn+LiDs+PIa+i+K++YLksALqG+Aa+miqH
F41B5.6 141 FSGDILHFQSFMELFNTLIDSQPIAEIFKFYYLKSALQGNAARMIQH 187
LpLteaNYdvARelLkEqYGntartRHhLlReLQnLPsmnnnhsvsqlQe
LpLt+aNY+vAR+lLkE+++nt+++RH+LlR+LQ++++++nnhs++q+Q+
F41B5.6 188 LPLTAANYPVARKLLKERFDNTTILRHLLLRKLQEIQPVPNNHSLQQIQQ 237
LWteasrIFrQLeniqpdlDNpllAnIIeqKLPkRYikriytGknldrey
LWte+++IF+QL++iqpd+DN+++AnII++KLP+RYikriy+G ++d+++
F41B5.6 238 LWTECVSIFKQLCKIQPDADNTMIANIITSKLPRRYIKRIYFG-HRDCDF 286
nAseLlakvrefIkaeliVdTIaNd<-*
+Ase+l++vr+fI++++iVdTIaNd
F41B5.6 287 LASEILEMVRTFIETDFIVDTIAND 311
Phosphoesterase: domain 1 of 1, from 520 to 559: score 8.4, E = 0.054
*->psstfdHtSvLafiekrFgLpsLpnisawrdavagdltst<-*
p++++d++++L f++ ++ + Lp++s+w+ ++++ +++
F41B5.6 520 PTTLLDQATILSFLSMLYVFSILPGLSTWNGLPIWLQWNI 559