Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F41C3.4
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Query: F41C3.4 CE02732 status:Predicted SW:Q20263 protein_id:AAC46811.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Got1 Got1-like family 218.6 3.6e-64 1
SCO1-SenC SCO1/SenC 3.2 3.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SCO1-SenC 1/1 19 38 .. 1 22 [. 3.2 3.5
Got1 1/1 1 101 [. 1 101 [] 218.6 3.6e-64
Alignments of top-scoring domains:
SCO1-SenC: domain 1 of 1, from 19 to 38: score 3.2, E = 3.5
*->ialilgvgallsyLfyrskRlL<-*
i i+gv+ +l+++f + R+L
F41C3.4 19 ITFIIGVQRTLVFFF--EFRKL 38
Got1: domain 1 of 1, from 1 to 101: score 218.6, E = 3.6e-64
*->lFFDkaLLAlGNlLFlaGvfLIIGlqrTfqFFfrrqklKGtifFlgG
+F+D+aLLA+GNlLF++G+++IIG+qrT++FFf+++klKG+i+F+gG
F41C3.4 1 MFLDSALLAIGNLLFIVGITFIIGVQRTLVFFFEFRKLKGSILFFGG 47
vllVLfgWPllGmilEsyGFivLFkgFfPvivvFLRsvPviGsilnlPfI
+l+VLfg+Pl+Gmi+E++GFivLF+gF+P+iv++LRs+P+i++i++lP+I
F41C3.4 48 ILVVLFGYPLFGMIAECWGFIVLFGGFLPGIVNLLRSIPGISTITYLPGI 97
rpiv<-*
r+++
F41C3.4 98 RQVL 101