Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F41D9.5
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Query: F41D9.5 CE10242 sulfate permease status:Partially_confirmed SW:Q94225 protein_id:AAB52608.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Sulfate_transp Sulfate transporter family 367.7 1.2e-106 1
STAS STAS domain 99.4 1.2e-28 1
MaoC_dehydratas MaoC like domain 9.9 0.16 1
NC NC domain 6.2 3.1 1
biotin_lipoyl Biotin-requiring enzyme 5.1 7.1 1
Tautomerase Tautomerase enzyme 4.8 2.2 1
Acyl_transf_2 Acyl transferase 3.0 3.4 1
Methionine_synt Methionine synthase, vitamin-B12 inde 2.1 5.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
NC 1/1 117 148 .. 1 32 [. 6.2 3.1
Tautomerase 1/1 173 192 .. 46 65 .] 4.8 2.2
MaoC_dehydratas 1/1 175 204 .. 101 133 .] 9.9 0.16
Acyl_transf_2 1/1 351 368 .. 277 294 .] 3.0 3.4
Sulfate_transp 1/1 209 500 .. 1 328 [] 367.7 1.2e-106
STAS 1/1 522 672 .. 1 116 [] 99.4 1.2e-28
biotin_lipoyl 1/1 649 675 .. 1 31 [. 5.1 7.1
Methionine_synt 1/1 665 678 .. 336 349 .] 2.1 5.9
Alignments of top-scoring domains:
NC: domain 1 of 1, from 117 to 148: score 6.2, E = 3.1
*->svlskkAlvkkellkdvvggckyrvNnkcdal<-*
s+ + A+ k++l++++ ++++ vN+ +d l
F41D9.5 117 SLMTHGAIEKVMLRTATSYNATAYVNHTLDEL 148
Tautomerase: domain 1 of 1, from 173 to 192: score 4.8, E = 2.2
*->vieEvpeenwgvgGeslgar<-*
++eEv++e+w g++++++
F41D9.5 173 FVEEVTMEMWTEGVTPVKQI 192
MaoC_dehydratas: domain 1 of 1, from 175 to 204: score 9.9, E = 0.16
*->dtlrvevevvgvkrdvksevktvettvgvtvga<-*
+++++e++ +g +++vk ++ +v+tt++ +g+
F41D9.5 175 EEVTMEMWTEG-VTPVK-QI-HVATTIIFLAGV 204
Acyl_transf_2: domain 1 of 1, from 351 to 368: score 3.0, E = 3.4
*->dLtiatvnERRlKneies<-*
++t+a v E+R K +i+
F41D9.5 351 HITVAKVVEKRYKYKINH 368
Sulfate_transp: domain 1 of 1, from 209 to 500: score 367.7, E = 1.2e-106
*->lGllRLGfLveflSravisGFmaGaAilIllsQLkgllGlsnlftrh
+G++RL+ L+ ++S++v+sGF+ G +i+++ +Q+ ++lG++ ++r+
F41D9.5 209 MGVFRLQYLTSLFSEQVMSGFVVGGGIHVFFAQIGNMLGIE--LPRR 253
sgivsvlralfdlvdnlhdflkwnwatlvigisfLifLliikllpnpkkr
sg++++ +++dlv+nl ++++ ++ l+
F41D9.5 254 SGPGYLYYRIWDLVENLDN---------------VHIPTVCISLS----- 283
kkklfwvpapapLvavilaTlisylfnrhkladrygvsivGeipsGlppp
+++++ + ++++a++l +++ y++ ++ v + + + +ppp
F41D9.5 284 --SFLFLVFGKEYLAPWLNSAFNYPV------PFELVLLTHYLINRFPPP 325
slPrlnlspstlldllpialalAlvgllesiltaksfakikgykiDsNkE
slPr++l++++ l ++ i A+ +++ +i++ak++ k+++yki++++E
F41D9.5 326 SLPRFDLIRHIGLNAAAI----AITAVAIHITVAKVVEKRYKYKINHGQE 371
LvAqGiaNIvgslfggypatgsfsRSavNvkaGakTqLSgivmavvvllv
L+A+G+ +++s+f+++p+t +f+RS+v ++ G+ TqL ++++++++l+v
F41D9.5 372 LYALGFVGVLSSFFPVFPVTSGFARSVVGAAVGGSTQLTCLFSSLALLSV 421
lLfltplleyiPmavLaaIiivaligmLidwselirllwklsklDfliwl
+L+++p ley+P+++L+a+ii a +gmL +++el+ lw + k+Df+iwl
F41D9.5 422 ILCIGPALEYLPQCILSAMIIFAQKGMLEKFGELKS-LWPVFKIDFTIWL 470
atffgtvfvdNleiGvlvGVaiSllflilrv<-*
+ ff+tv++d + +G+l+++++++l++i+r+
F41D9.5 471 MSFFLTVCYD-MGEGLLMAIGFAVLTTIIRT 500
STAS: domain 1 of 1, from 522 to 672: score 99.4, E = 1.2e-28
*->yieaetipgievlilrlsGpLdfanae.lkerllraiaegperk...
+ ++e+i+g v+i+r ++pL f +++++ +++++++++++++k+++
F41D9.5 522 KRDLERIQGN-VCIFRMDAPLIFTSSDrFTMSVWQCVKKWERCKses 567
................................kielrhvilDlsaVsfiD
+ ++ +++++ + +++ ++ +++ +++++ + ++++D+++ +++D
F41D9.5 568 fvtieqmnsdrsadifdsklksarrrwkrdqkSENRCKLVIDCDGFPYVD 617
ssGlgaLlelykelkkrGvelvLvgpspevrrtleltGlddligkekifp
Gl++L+++y +l++ G+++++v + ++++++++t++ ++++++k+f+
F41D9.5 618 YLGLSTLKSVYVDLQAAGIQCFFVVQKSDLKKLFRATDFYEVVDESKVFN 667
tvaeA<-*
v++A
F41D9.5 668 KVGDA 672
biotin_lipoyl: domain 1 of 1, from 649 to 675: score 5.1, E = 7.1
*->keiksPmiGesvkegtPvaevlVkvGDkVka<-*
k +++ ++ e+v e++ v+ kvGD Vka
F41D9.5 649 KLFRATDFYEVVDESK----VFNKVGDAVKA 675
Methionine_synt: domain 1 of 1, from 665 to 678: score 2.1, E = 5.9
*->aiaaLkNMVeAAkl<-*
++++++ +V+AA++
F41D9.5 665 VFNKVGDAVKAAEQ 678