Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F41D9.5
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Query:  F41D9.5  CE10242   sulfate permease status:Partially_confirmed SW:Q94225 protein_id:AAB52608.1

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
Sulfate_transp  Sulfate transporter family              367.7   1.2e-106   1
STAS            STAS domain                              99.4    1.2e-28   1
MaoC_dehydratas MaoC like domain                          9.9       0.16   1
NC              NC domain                                 6.2        3.1   1
biotin_lipoyl   Biotin-requiring enzyme                   5.1        7.1   1
Tautomerase     Tautomerase enzyme                        4.8        2.2   1
Acyl_transf_2   Acyl transferase                          3.0        3.4   1
Methionine_synt Methionine synthase, vitamin-B12 inde     2.1        5.9   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
NC                1/1     117   148 ..     1    32 [.     6.2      3.1
Tautomerase       1/1     173   192 ..    46    65 .]     4.8      2.2
MaoC_dehydratas   1/1     175   204 ..   101   133 .]     9.9     0.16
Acyl_transf_2     1/1     351   368 ..   277   294 .]     3.0      3.4
Sulfate_transp    1/1     209   500 ..     1   328 []   367.7 1.2e-106
STAS              1/1     522   672 ..     1   116 []    99.4  1.2e-28
biotin_lipoyl     1/1     649   675 ..     1    31 [.     5.1      7.1
Methionine_synt   1/1     665   678 ..   336   349 .]     2.1      5.9

Alignments of top-scoring domains:
NC: domain 1 of 1, from 117 to 148: score 6.2, E = 3.1
                   *->svlskkAlvkkellkdvvggckyrvNnkcdal<-*
                      s+ +  A+ k++l++++ ++++  vN+ +d l
     F41D9.5   117    SLMTHGAIEKVMLRTATSYNATAYVNHTLDEL    148

Tautomerase: domain 1 of 1, from 173 to 192: score 4.8, E = 2.2
                   *->vieEvpeenwgvgGeslgar<-*
                      ++eEv++e+w  g++++++
     F41D9.5   173    FVEEVTMEMWTEGVTPVKQI    192

MaoC_dehydratas: domain 1 of 1, from 175 to 204: score 9.9, E = 0.16
                   *->dtlrvevevvgvkrdvksevktvettvgvtvga<-*
                      +++++e++ +g +++vk ++ +v+tt++  +g+
     F41D9.5   175    EEVTMEMWTEG-VTPVK-QI-HVATTIIFLAGV    204

Acyl_transf_2: domain 1 of 1, from 351 to 368: score 3.0, E = 3.4
                   *->dLtiatvnERRlKneies<-*
                      ++t+a v E+R K +i+
     F41D9.5   351    HITVAKVVEKRYKYKINH    368

Sulfate_transp: domain 1 of 1, from 209 to 500: score 367.7, E = 1.2e-106
                   *->lGllRLGfLveflSravisGFmaGaAilIllsQLkgllGlsnlftrh
                      +G++RL+ L+ ++S++v+sGF+ G +i+++ +Q+ ++lG++  ++r+
     F41D9.5   209    MGVFRLQYLTSLFSEQVMSGFVVGGGIHVFFAQIGNMLGIE--LPRR 253

                   sgivsvlralfdlvdnlhdflkwnwatlvigisfLifLliikllpnpkkr
                   sg++++  +++dlv+nl                 ++++ ++  l+
     F41D9.5   254 SGPGYLYYRIWDLVENLDN---------------VHIPTVCISLS----- 283

                   kkklfwvpapapLvavilaTlisylfnrhkladrygvsivGeipsGlppp
                     +++++ + ++++a++l +++ y++       ++ v + + +   +ppp
     F41D9.5   284 --SFLFLVFGKEYLAPWLNSAFNYPV------PFELVLLTHYLINRFPPP 325

                   slPrlnlspstlldllpialalAlvgllesiltaksfakikgykiDsNkE
                   slPr++l++++ l ++ i    A+ +++ +i++ak++ k+++yki++++E
     F41D9.5   326 SLPRFDLIRHIGLNAAAI----AITAVAIHITVAKVVEKRYKYKINHGQE 371

                   LvAqGiaNIvgslfggypatgsfsRSavNvkaGakTqLSgivmavvvllv
                   L+A+G+  +++s+f+++p+t +f+RS+v ++ G+ TqL ++++++++l+v
     F41D9.5   372 LYALGFVGVLSSFFPVFPVTSGFARSVVGAAVGGSTQLTCLFSSLALLSV 421

                   lLfltplleyiPmavLaaIiivaligmLidwselirllwklsklDfliwl
                   +L+++p ley+P+++L+a+ii a +gmL +++el+  lw + k+Df+iwl
     F41D9.5   422 ILCIGPALEYLPQCILSAMIIFAQKGMLEKFGELKS-LWPVFKIDFTIWL 470

                   atffgtvfvdNleiGvlvGVaiSllflilrv<-*
                   + ff+tv++d + +G+l+++++++l++i+r+
     F41D9.5   471 MSFFLTVCYD-MGEGLLMAIGFAVLTTIIRT    500

STAS: domain 1 of 1, from 522 to 672: score 99.4, E = 1.2e-28
                   *->yieaetipgievlilrlsGpLdfanae.lkerllraiaegperk...
                      + ++e+i+g  v+i+r ++pL f +++++ +++++++++++++k+++
     F41D9.5   522    KRDLERIQGN-VCIFRMDAPLIFTSSDrFTMSVWQCVKKWERCKses 567

                   ................................kielrhvilDlsaVsfiD
                     + ++ +++++ +  +++ ++ +++ +++++ +   ++++D+++ +++D
     F41D9.5   568 fvtieqmnsdrsadifdsklksarrrwkrdqkSENRCKLVIDCDGFPYVD 617

                   ssGlgaLlelykelkkrGvelvLvgpspevrrtleltGlddligkekifp
                     Gl++L+++y +l++ G+++++v  + ++++++++t++ ++++++k+f+
     F41D9.5   618 YLGLSTLKSVYVDLQAAGIQCFFVVQKSDLKKLFRATDFYEVVDESKVFN 667

                   tvaeA<-*
                    v++A
     F41D9.5   668 KVGDA    672

biotin_lipoyl: domain 1 of 1, from 649 to 675: score 5.1, E = 7.1
                   *->keiksPmiGesvkegtPvaevlVkvGDkVka<-*
                      k +++ ++ e+v e++    v+ kvGD Vka
     F41D9.5   649    KLFRATDFYEVVDESK----VFNKVGDAVKA    675

Methionine_synt: domain 1 of 1, from 665 to 678: score 2.1, E = 5.9
                   *->aiaaLkNMVeAAkl<-*
                      ++++++ +V+AA++
     F41D9.5   665    VFNKVGDAVKAAEQ    678



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