hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F42C5.9
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Query:  F42C5.9  CE04562    status:Confirmed TR:Q20329 protein_id:AAA81487.1

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
actin          Actin                                    132.5    6.3e-40   1
PH             PH domain                                 13.7      0.019   1
Sulfotransfer2 Sulfotransferase                           2.7        4.9   1
NosD           Periplasmic copper-binding protein (No     1.6        8.2   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
Sulfotransfer2   1/1      85   153 ..     1    70 [.     2.7      4.9
PH               1/1      58   158 ..     1    85 []    13.7    0.019
NosD             1/1     218   232 ..     1    15 [.     1.6      8.2
actin            1/1     266   536 ..    96   362 ..   132.5  6.3e-40

Alignments of top-scoring domains:
Sulfotransfer2: domain 1 of 1, from 85 to 153: score 2.7, E = 4.9
                   *->ilierkplgvsipskksssdapfetrpnPvglildeshsdtereqqe
                       +i++k + + i++    ++ap ++    +  ++++++++t +++
     F42C5.9    85    QYIRMKEGRLQIFASHYAGEAPAQELVLSGADVDANKDERTLTIHGG 131

                   RrellravCkkyglqsktrdels<-*
                   R e++   C+ +++++++++ ++
     F42C5.9   132 R-EHVKYYCRVPSAVFDKWRQSF    153

PH: domain 1 of 1, from 58 to 158: score 13.7, E = 0.019
                   *->vikeGwLlkks...........kswkkRyfvLfndvLlyykdsk..k
                      v +eG++ +  ++ +++++ ++++w k y+  ++++L ++ +   ++
     F42C5.9    58    VTMEGHVEVPAdevtksdgldnEGWMKQYIRMKEGRLQIFASHYagE 104

                   kpkgsipLsgcqvek.pdkncFeirt.dr..tlllqaeseeerkeWvkai
                    p   + Lsg+ v+ ++d++++ i+ +  +  ++ + +s+  +++W +++
     F42C5.9   105 APAQELVLSGADVDAnKDERTLTIHGgREhvKYYCRVPSA-VFDKWRQSF 153

                   qsair<-*
                    s+++
     F42C5.9   154 LSHCA    158

NosD: domain 1 of 1, from 218 to 232: score 1.6, E = 8.2
                   *->VfiqkgAeRAvvekN<-*
                      +f+++ A R+ +++N
     F42C5.9   218    IFVGEDAYRPEIRHN    232

actin: domain 1 of 1, from 266 to 536: score 132.5, E = 6.3e-40
                   *->ELrvapeeHpvLLtEaPlnPKanREkmtqimFEtfnvpamYvaiqav
                      EL+v+p +  vLL      P     ++ qi  E  ++ +  +  q
     F42C5.9   266    ELKVEPWKYKVLLSIPQNIPTVLIGELLQICLEDIKFQSAGITRQPS 312

                   LsLyasGRttGivlDsGDGvsHtvpiyeGyalpHailrldlAGRDLtdyl
                   L Lya   ttG+v+D G+ v   vp+ +Gy +  ai  +      + d l
     F42C5.9   313 LILYAYDVTTGVVVDIGERVN-IVPVIDGYVVESAICSIPYGSQQMGDSL 361

                   mkiLterg...ysftttAerEivrdiKEkLcyvAldyeeelktakessel
                      L  + ++ y+f++  e+ i+r   E+ +yv  dy++e k  ++++++
     F42C5.9   362 RASLSAHNkglYAFQSPVEKLILRFALEQTTYVPEDYQKEEKSENKETRI 411

                   eksyeLpDGqvit...igneRfrcpevLfqpsllggkEaagihettynsi
                         p   + t+ +i n Rf c e Lf+p+   g +++g+h++++++i
     F42C5.9   412 SLDAFTPSPGMQTrfdIDNSRFLCTEGLFKPKKW-GLDTKGLHQLIHEAI 460

                   mkCDvDiRkdLygnivLsGGttmfpgiaerlskeitalaPssmkikviap
                    +C +D R+ Ly ni L+GG+++ pgiae+l++e++++ P++++ +v  +
     F42C5.9   461 LQCPIDSRRTLYRNIYLAGGASLMPGIAEKLEQELSTVVPNTIHTQVNIS 510

                   PeRkysvWiGGsilasLstfqqmwit<-*
                   P R  + ++G  i+as stf++ +i+
     F42C5.9   511 PWRYNAAYLGAQIVASASTFEDSCIS    536

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