Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F42H10.6
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Query:  F42H10.6  CE24969    status:Partially_confirmed SW:P34419 protein_id:AAA28024.2

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
4HBT     Thioesterase superfamily                        65.2    1.3e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
4HBT       1/1      58   146 ..     1    87 []    65.2  1.3e-18

Alignments of top-scoring domains:
4HBT: domain 1 of 1, from 58 to 146: score 65.2, E = 1.3e-18
                   *->kpvtpndtnfgGhvhGGvylPGValldeaagaa........vvvvve
                      + v+++++n  G++hGG ++   +l d + + a + + ++++++ ve
    F42H10.6    58    MVVQHQHLNSKGTLHGGQTA---TLTDVITARAvgvtvkdkGMASVE 101

                   lnidFlrPvrpGdvltvearvlrlGrtsavvevevydedgev.gg.vata
                   l + +l Pv++Gdvl+++a+vl++Grt a+ ++e+     ++++ +   a
    F42H10.6   102 LAVSYLLPVKVGDVLEITAHVLKVGRTMAFTDCEF-----RRkSDgKMSA 146

                   <-*

    F42H10.6     -     -



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