Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F42H10.6
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Query: F42H10.6 CE24969 status:Partially_confirmed SW:P34419 protein_id:AAA28024.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
4HBT Thioesterase superfamily 65.2 1.3e-18 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
4HBT 1/1 58 146 .. 1 87 [] 65.2 1.3e-18
Alignments of top-scoring domains:
4HBT: domain 1 of 1, from 58 to 146: score 65.2, E = 1.3e-18
*->kpvtpndtnfgGhvhGGvylPGValldeaagaa........vvvvve
+ v+++++n G++hGG ++ +l d + + a + + ++++++ ve
F42H10.6 58 MVVQHQHLNSKGTLHGGQTA---TLTDVITARAvgvtvkdkGMASVE 101
lnidFlrPvrpGdvltvearvlrlGrtsavvevevydedgev.gg.vata
l + +l Pv++Gdvl+++a+vl++Grt a+ ++e+ ++++ + a
F42H10.6 102 LAVSYLLPVKVGDVLEITAHVLKVGRTMAFTDCEF-----RRkSDgKMSA 146
<-*
F42H10.6 - -