Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F43E2.4
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Query: F43E2.4 CE07240 locus:haf-2 membrane transport protein status:Partially_confirmed TR:O02086 protein_id:AAC71121.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ABC_tran ABC transporter 204.8 3.7e-58 1
ABC_membrane ABC transporter transmembrane region 162.1 9.7e-45 1
AIG1 AIG1 family 6.6 1.2 1
DUF161 Uncharacterized BCR, YitT family COG12 5.5 5.9 1
Microcin Colicin E1 (microcin) immunity protein 5.1 7.2 1
IstB IstB-like ATP binding protein 3.6 5.8 1
RNA_pol_Rpb2_1 RNA polymerase beta subunit 2.2 3.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF161 1/1 332 354 .. 62 84 .] 5.5 5.9
RNA_pol_Rpb2_1 1/1 351 381 .. 1 31 [. 2.2 3.1
ABC_membrane 1/1 199 470 .. 1 285 [] 162.1 9.7e-45
IstB 1/1 539 556 .. 46 63 .. 3.6 5.8
AIG1 1/1 543 557 .. 1 15 [. 6.6 1.2
ABC_tran 1/1 542 726 .. 1 199 [] 204.8 3.7e-58
Microcin 1/1 745 758 .. 1 14 [. 5.1 7.2
Alignments of top-scoring domains:
DUF161: domain 1 of 1, from 332 to 354: score 5.5, E = 5.9
*->ykllgkrfalyTllgvfissvfi<-*
++l+++r a+ T+++v ++++++
F43E2.4 332 MILMSWRLAMVTFIAVPLVGFIT 354
RNA_pol_Rpb2_1: domain 1 of 1, from 351 to 381: score 2.2, E = 3.1
RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
*->glveqqldSFneFleeglqeiieefkkiese<-*
g++ +SF + ++e+lq+ i e +++++e
F43E2.4 351 GFITKAYSSFYDKISEKLQQTIAETNQMAEE 381
ABC_membrane: domain 1 of 1, from 199 to 470: score 162.1, E = 9.7e-45
*->lliailllilagatalvtfplllgrlldsgfplsdgnddharsslis
+ ++++l + +++ ++ +p +++++++ ++++ ++ + s
F43E2.4 199 FASGFVFLTVYALARVF-IPNYTAQVISD--IVNKRGIQ---ALIHS 239
lailslfavfvl.iglllqgsfyllagerlgqrlrkrlfrallrqilglf
+++l ++++++ + + +l+g + +a ++ r+r +lf++l+rq++++
F43E2.4 240 IIVL-TCLTATSsLFGGLRGGCFDYATALVTLRIRLDLFTSLIRQDIAFY 288
dsffdtnsvGeltsRltnDvekirdglgeklgllfqslatvvgglivmfy
d ++G+ +sRlt+D+++i+++ ++++ ++ ++ ++++g+l++m +
F43E2.4 289 DT----AKTGDTMSRLTSDCQTISSTVSTNVNVFMRNGVMLIGALAFMIL 334
yswkLtLillailpllillsavlakklrklsrkeqkayakagsvaeEsls
+sw+L+ ++++++pl++++++ +++ k+s+k q+ a+ +++aeE++s
F43E2.4 335 MSWRLAMVTFIAVPLVGFITKAYSSFYDKISEKLQQTIAETNQMAEEVVS 384
girTVkafgrEeyelerfdkaledaekagikkaiiagllfgitqlisyls
+rTV++f+ E++el+rf++ l + + +kk i++ + +++ +++
F43E2.4 385 TMRTVRSFACEKKELKRFEDRLSSTLSVNRKKSIAYLFYTWNNEFCDNAI 434
yalalwfGgylvasvisgglsvgtlfaflslgnqligpl<-*
++++l +Gg+l v++g + +l++fl++ +ql l
F43E2.4 435 LVAVLFYGGHL---VMTGKMEKEQLITFLLYQMQLGENL 470
IstB: domain 1 of 1, from 539 to 556: score 3.6, E = 5.8
*->veraeNlvLlGPpGvGKT<-*
+ +e ++L+GP+G GK+
F43E2.4 539 IKSGETVALVGPSGGGKS 556
AIG1: domain 1 of 1, from 543 to 557: score 6.6, E = 1.2
*->rnIVLVGRTGNGKSA<-*
+++ LVG +G GKS+
F43E2.4 543 ETVALVGPSGGGKSS 557
ABC_tran: domain 1 of 1, from 542 to 726: score 204.8, E = 3.7e-58
*->GevlalvGpNGaGKSTLLklisGllppteGtilldGardlsdlsklk
Ge++alvGp+G GKS++ li ++++p+eG+++ldG +++d++
F43E2.4 542 GETVALVGPSGGGKSSIVSLIEHFYEPDEGSVTLDG-VPIKDIN--- 584
erlerlrknigvvfQdptlfpnpeltvreniafglrlslglskdeqrdrl
+ +++ + ++ v Q+p+l+ +++vr ni++g +++d++ +++
F43E2.4 585 HVYYHQK--VALVAQEPVLY---NGSVRHNILYGCDF---ATEDDMLNAS 626
kkagaeelLerlglgydhlldrrpgtLSGGqkQRvaiARaLltkpklLlL
k+a++++++ +l gyd+ ++++ ++SGGqkQR+aiARaL+++p +L+L
F43E2.4 627 KMANVHDFVMELEKGYDTNCGEKGVQMSGGQKQRIAIARALVRNPAVLIL 676
DEPTagLDpasraqllellrelrqqggTvllitHdldlldrlaDrilvle
DE+T++LD +s+a ++++l + q ++Tv+++ H+l ++ a++i+v+
F43E2.4 677 DEATSALDTESEALVQQALSRCAQ-ERTVIIVAHRLST-IEKANKIAVIV 724
dG<-*
+G
F43E2.4 725 KG 726
Microcin: domain 1 of 1, from 745 to 758: score 5.1, E = 7.2
*->yyfLasdkmLyaiv<-*
yy+L+s +mL a v
F43E2.4 745 YYSLVSRQMLSAKV 758