Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F43G6.6
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Query: F43G6.6 CE20788 locus:spt-3 status:Partially_confirmed TR:Q20367 protein_id:CAA90395.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
jmjC jmjC domain 46.4 3.1e-12 1
PHD PHD-finger 12.8 0.0061 1
K_tetra K+ channel tetramerisation domain 4.3 6.1 1
SpoVR SpoVR like protein 2.7 5.5 1
ADH_zinc_N Zinc-binding dehydrogenase 2.3 8.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PHD 1/1 29 72 .. 9 51 .] 12.8 0.0061
K_tetra 1/1 53 74 .. 90 111 .] 4.3 6.1
ADH_zinc_N 1/1 104 127 .. 1 23 [. 2.3 8.2
SpoVR 1/1 178 192 .. 1 15 [. 2.7 5.5
jmjC 1/1 269 369 .. 1 126 [] 46.4 3.1e-12
Alignments of top-scoring domains:
PHD: domain 1 of 1, from 29 to 72: score 12.8, E = 0.0061
*->dddaggdllqCDgCdrwfHlaClgpple.eppegkWlCpeCtpk<-*
+ +++++++ C +C ++H C g+++ + +k++C +C pk
F43G6.6 29 YRENDNKWITCYHCQTSYHFLCSGLEEYeYYLIDKFYCSKCEPK 72
K_tetra: domain 1 of 1, from 53 to 74: score 4.3, E = 6.1
*->leEleFygldelaiesCcedeY<-*
leE e+y +d+ ++++C ++
F43G6.6 53 LEEYEYYLIDKFYCSKCEPKTG 74
ADH_zinc_N: domain 1 of 1, from 104 to 127: score 2.3, E = 8.2
*->lgg.kpleveevpvpepgpgeVlv<-*
+ + +++ e vpep ++eV+v
F43G6.6 104 KTWvEDFITWEKNVPEPSADEVRV 127
SpoVR: domain 1 of 1, from 178 to 192: score 2.7, E = 5.5
*->gsdwtfkeLdeyaeE<-*
gsd++ +++d ++E
F43G6.6 178 GSDYAVDTIDVFNQE 192
jmjC: domain 1 of 1, from 269 to 369: score 46.4, E = 3.1e-12
*->wlylGmpfsttpwHiedqglySinylhfgapkvWyiiPpeyaekfek
+ + m s+t++H++ g++ + +++f ++k i++ + +++ +
F43G6.6 269 ICAAAMANSYTDFHVDFGGTS-VYFHVFKGEK---IFYIAAPTEEN- 310
lhkflskhgpapdleggeqpdldlrhlltlisPkvlpLlenGipvyrfvQ
++++ + + +++++ ++ L+ + r+v
F43G6.6 311 --FVMYQA-------------HETSTDSSIWLGHT--LKGA---LKRVVV 340
kpGEfVftfPGayHqVfNlGfniaeavNF<-*
k G+++ +++G++H+V+++ +++a+ NF
F43G6.6 341 KEGQTLLIPAGWIHAVLTTIDSLAFGGNF 369