Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F44A2.5a
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Query: F44A2.5a CE29801 status:Partially_confirmed TR:Q20378 protein_id:AAA83444.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
MIF4G MIF4G domain 116.9 4.1e-33 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
MIF4G 1/1 159 359 .. 1 230 [] 116.9 4.1e-33
Alignments of top-scoring domains:
MIF4G: domain 1 of 1, from 159 to 359: score 116.9, E = 4.1e-33
*->ekkvkgllnkLsespenfekiikellkllmsdlrenDPennkellke
e+ +++ +++L + ++++++ ++++++ + ++++e l+e
F44A2.5a 159 EHEIEKAITELR--ALQLHSHSIQIEQWIGG-------AFCDEELAE 196
lielifekaveepnfipayArLcalLnsknpkteFgklllnrlqeeFekr
+i + ++ + +e + + +++Lca+ +++ F+k l+ +l + +e+
F44A2.5a 197 CIGSALCRHAIEGGGGSGVGKLCANFKYAPSIGSFVKGLIIALSQYLEC- 245
eleaeleeeeesdrrrrlglvrFlgELynfqvltek.....iileclkel
+++ +e ++r+++++++Fl+ELy + ++k++ +i++++++ l
F44A2.5a 246 -----RHKIREDHFRMWISFIQFLTELYSNLGSDSKgelatIVFDVFNYL 290
ledlteedlqdqvrdeeslecllslLetiGkdLensekspklmdellerl
l++++ e+ ++ +lecl+s+L+ G+dLe ++p+++ l +++
F44A2.5a 291 LRPPILEH-----VKIQELECLISILIKGGYDLE--RECPDRLALLKDLI 333
qdillkrdkkhvrvesepelssrirfmledlielrknk<-*
+d++ + ++++ r m+++l+el ++
F44A2.5a 334 RDAFID------------VSEPWARKMILLLLELGASG 359