Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F44C8.1
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Query: F44C8.1 CE10378 cytochrome P450 status:Partially_confirmed TR:O16362 protein_id:AAB65888.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
p450 Cytochrome P450 326.2 1.9e-101 1
Bindin Bindin 3.8 3.9 1
NAD_synthase NAD synthase 2.9 5.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
NAD_synthase 1/1 21 30 .. 251 260 .] 2.9 5.3
Bindin 1/1 88 109 .. 1 28 [. 3.8 3.9
p450 1/1 26 490 .. 1 494 [] 326.2 1.9e-101
Alignments of top-scoring domains:
NAD_synthase: domain 1 of 1, from 21 to 30: score 2.9, E = 5.3
*->KRsqlPpgpk<-*
KR++lPpgp+
F44C8.1 21 KRRNLPPGPI 30
Bindin: domain 1 of 1, from 88 to 109: score 3.8, E = 3.9
*->yGnmqGGygYPQAmnpqmgGvPvqnYmg<-*
G + YPQ+ n+ +G+ nY g
F44C8.1 88 -GDTY-KDKYPQPLNQKIRGG---NY-G 109
p450: domain 1 of 1, from 26 to 490: score 326.2, E = 1.9e-101
*->PpgP.plPlfGnllqlgrgkdilhsvltklrkkYGpifrlylGsrpv
PpgP plP++Gn+l +++ ++ ++ + kkYG+++++++G +p
F44C8.1 26 PPGPiPLPFMGNILTMLL-NKPGYECFRNCTKKYGDVYTFWMGKTPF 71
vvlsgpelvkevLikkgeefsgrpdeawfatlsvpfrgkgilfsdgGprW
v++s+++l k ++++g ++ + + + + + + ++gi+ s+g + W
F44C8.1 72 VMISSYDLLKDTFVRDG-DTYKDKYPQPLNQKI-RGGNYGIVESNG-HLW 118
kalRrlltptfrsfgmgklkslepriqeeaddlverlrktagepgsgrvi
+ +Rr+ ++t+r+fg gk + + i e +d +++ + g
F44C8.1 119 STHRRFALTTLRDFGLGKD-LMQEKILIEVEDIFKKFDAQLGLE-----Q 162
ditellsravlnvIcsilFgvrfdsledee....alplvklvqellllvs
d++ ++ a nvI+ +Fg rf+ + ee+ +++ +l+++ + + ++
F44C8.1 163 DVSVVMNNAIANVINQNIFGYRFE-GDKEEdfkkLRELMEYQETAFATFK 211
spdhqlldlfp.lllylpgphlrkfkearkelkdyldklieerretlddd
+ +++ ++ + ll+ + ++ ++++e r+ ++ ++d ie +r+++d d
F44C8.1 212 VYV-EAFIPKVgALLPGR-SLNELLEEWRDNFYTFFDTQIENHRKKIDFD 259
geeeekkksprdfldalllaknaemeeekdge.reselsdeelaatvldl
+d++ a l + +++e ge + +s+++l t+ldl
F44C8.1 260 ------SQESLDYAEAYLKEQ---RKQEALGEfE--LFSNKQLSNTCLDL 298
lfAGteTTsstlswaLylLakhPevqaklreEidevigdhrkeisptydD
AG TT +t w++ + + hP+v++k+ eE d+v+g++r +t+ D
F44C8.1 299 WLAGLSTTNTTVNWTICYVLNHPDVLQKMNEEFDQVVGSDR---LVTMGD 345
lqnmPyldavIkEtLRlypvvpnlllpRvatkDteigGylIPKGtlVivn
+n+Py +av++E++R +vp ++l++++tkDt+i+Gy ++KGt Vi
F44C8.1 346 KNNLPYFNAVLNESQRCANIVP-INLFHATTKDTVINGYPVKKGTGVIAQ 394
lyslhrDpkvfpnPeeFdPeRFldengtaivnfkrksfaflPFGaGpRnC
++ +++D+k+fp+P +F+P+RF deng +++k + +PF+ G+R+C
F44C8.1 395 ISTVMLDEKIFPDPYKFNPDRFIDENG-----KPIKIEQLIPFSIGKRQC 439
lGerlArmElflfLatlLqrFeleplpgvdpppidetpiisglvlppkpy
+Ge+lArmE+flfLa + r++ +p + ++ p+ d++ + v+p ++
F44C8.1 440 PGEGLARMEMFLFLANFFNRYKISP-SSKGFPNLDKKD--NVGVFPKDLH 486
klkf<-*
++
F44C8.1 487 AILN 490