Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F44D12.11
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Query: F44D12.11 CE05866 serine\/threonine kinase status:Partially_confirmed TR:Q20399 protein_id:CAA92614.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 162.0 9.9e-45 1
Polysacc_synt_2 Polysaccharide biosynthesis protein 2.6 6.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
pkinase 1/1 100 303 .. 77 294 .] 162.0 9.9e-45
Polysacc_synt_2 1/1 376 390 .. 549 563 .] 2.6 6.9
Alignments of top-scoring domains:
pkinase: domain 1 of 1, from 100 to 303: score 162.0, E = 9.9e-45
*->vmEymegGdLfdylrrnggplsekeakkialQilrGleYLHsngivH
v++ym++ L++++r++ ++ +++ +++Qi +Gl+YL+++++vH
F44D12.11 100 VFDYMPN-TLAEVIRQKL---TDLDIRLYTWQIFSGLKYLEEHRVVH 142
RDLKpeNILldendgtvKiaDFGLArllesssklttfvGTpwYmmAPEvi
RDLKp NIL+d+++g++Ki+DFG + ++ + ++++ T++Y+ +PE+
F44D12.11 143 RDLKPVNILVDHDTGFLKISDFGSVKIIVKGKANNHYQVTRFYR-PPEL- 190
leg.rgysskvDvWSlGviLyElltggplfpgadl.p...aftggdevdq
l+ +y vDvWS+G+i++E++ ++ +fpg+d + ++++ +
F44D12.11 191 LQKaMEYNCTVDVWSAGCIMAEMVKRRVVFPGRDSaQqmkLYCRCF---- 236
liifvlklPfsdelpktridpleelfriikrp.......glrlplpsncS
+ P+++ d+l++ + +++ + ++++++ +l ++
F44D12.11 237 ------GVPTEQ-------DILAMKGERLENElwkftkgFGLQRLVTEIT 273
eelkdLlkkcLnkDPskRpGsatakeilnhpwf<-*
++ ++++k++L + P+kR+ k++l++ +f
F44D12.11 274 PDQLQFIKRILVYTPEKRL---HGKQLLQDDFF 303
Polysacc_synt_2: domain 1 of 1, from 376 to 390: score 2.6, E = 6.9
*->dyervRelLleavtg<-*
d++r+R+lLl +++
F44D12.11 376 DHRRLRRLLLSVPNR 390