Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F44E5.5
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Query: F44E5.5 CE18679 Heat shock hsp70 proteins status:Partially_confirmed TR:Q9XTL8 protein_id:CAB05508.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
HSP70 Hsp70 protein 1328.1 0 1
Ski_Sno SKI/SNO/DAC family 3.9 7.2 1
Mur_ligase Mur ligase family, catalytic domain 2.3 9.7 1
Hydantoinase_A Hydantoinase/oxoprolinase 2.0 5.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Hydantoinase_A 1/1 191 210 .. 320 340 .. 2.0 5.4
Ski_Sno 1/1 298 313 .. 101 116 .] 3.9 7.2
Mur_ligase 1/1 374 391 .. 283 302 .] 2.3 9.7
HSP70 1/1 6 611 .. 1 620 [] 1328.1 0
Alignments of top-scoring domains:
Hydantoinase_A: domain 1 of 1, from 191 to 210: score 2.0, E = 5.4
*->gfenPvIgFDmGGTSTDVsli<-*
+++n v++FD GG ++DVs++
F44E5.5 191 DEKN-VLIFDLGGGTFDVSIL 210
Ski_Sno: domain 1 of 1, from 298 to 313: score 3.9, E = 7.2
*->ItrtDaerLcnallta<-*
Itr +e Lc++l +
F44E5.5 298 ITRARFEELCADLFRK 313
Mur_ligase: domain 1 of 1, from 374 to 391: score 2.3, E = 9.7
*->AAiAaAlllGkqldleaIre<-*
AA+ aA l G + e+I++
F44E5.5 374 AAVQAAVLSG--VKDETIKD 391
HSP70: domain 1 of 1, from 6 to 611: score 1328.1, E = 0
*->viGIDLGTTNScVAVmeggkpevIaNaeGnRtTPSvVAFtkkGERLV
+iGIDLGTT+ScV+++++gk+e++aN+eGn tTPS+VAFt++ ERLV
F44E5.5 6 AIGIDLGTTYSCVGIYQNGKVEILANSEGNKTTPSYVAFTDT-ERLV 51
GqaAKrQavtNpeNTvfsvKRlIGRrFddpeVqkdikhvPykvvkdsngd
G+aAK Qa++NpeNTvf++KRlIGRrFd+++Vq+d kh+P+ v+ + g+
F44E5.5 52 GDAAKDQAARNPENTVFDAKRLIGRRFDESTVQSDCKHWPFGVKGK-QGK 100
awveveylGkkktftPeeISAmvLqKmKetAEayLGekVtkAVITVPAYF
+++eve++G+k++f+PeeISAmvLqKmKetAE yLG++V++AVITVPAYF
F44E5.5 101 PVIEVEVKGEKRQFNPEEISAMVLQKMKETAETYLGHTVKDAVITVPAYF 150
NDaQRQATKDAGkIAGLnVlRIiNEPTAAALAYGLDKkdlpeeekernil
ND+QRQATKDA++IAGLn +RIiNEPTAAALAYGLDK+ ++e+n+l
F44E5.5 151 NDSQRQATKDAATIAGLNAIRIINEPTAAALAYGLDKGI----QDEKNVL 196
VfDLGGGTFDVSiLeigdG.VFEVkaTnGDThLGGeDFDnrlvdhlveeF
+fDLGGGTFDVSiL+i +G++FEVk+T+GDThLGGeDFD+r++ h+ +eF
F44E5.5 197 IFDLGGGTFDVSILSIAEGsIFEVKSTAGDTHLGGEDFDQRMLQHFMNEF 246
kkkegiDlskDkrAlqRLreAAEKAKieLSsssqTeinLpfitadadGPk
k+k+g+D+s ++rA++RLr+A+E+AK++LSs ++e+ +++++++ G +
F44E5.5 247 KRKTGKDISPNPRAIRRLRTACERAKRTLSS--SSEACVEVDSLFE-G-I 292
hlsetLtRAkFEeLvadLfeRtlePvekaLkDAklsksdIdeVvLVGGST
+l +++tRA+FEeL+adLf++tlePvekaL+DAkl+ks+IdeVvLVGGST
F44E5.5 293 DLCTKITRARFEELCADLFRKTLEPVEKALRDAKLDKSKIDEVVLVGGST 342
RIPkVqelVkefFGdGKePskgvNPDEAVAiGAAvQaGVLsG..seeVkD
R+Pk+q+l+k+fF+ GKe++ ++NPDEAVA GAAvQa+VLsG ++e kD
F44E5.5 343 RVPKIQKLLKDFFN-GKELNCSINPDEAVAFGAAVQAAVLSGvkDETIKD 391
vlLLDVtPLSLGIETlGGvmtklIeRNTTIPTkksqiFSTaaDNQtaVeI
vlL DV+PLSLGIET+GGvmt lI+RNT IPTk ++F+T+aDNQ++V+I
F44E5.5 392 VLLVDVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSI 441
qVlQGERelakDNklLGrFeLdGIpPAPrGvPqIEVtFdIDANGIlnVsA
qV++GER++++DN++LG+FeL+GIpPAPrGvPqIEVtFdIDANGIlnVsA
F44E5.5 442 QVYEGERAMTRDNHRLGTFELSGIPPAPRGVPQIEVTFDIDANGILNVSA 491
kDkgtgkeqkItItnssgrLsddEIerMvkdAEkyaeeDkkrkeriEakN
+Dk+tgk++ ItI+n++grL++++I+rMv +A ++ +eD +++er+ a+N
F44E5.5 492 EDKSTGKSNRITIQNEKGRLTQSDIDRMVHEAKQFEKEDGEQRERVQARN 541
eaEsyvystekslkeeklgdklseadkekiekkvedaiewLkealegedd
++E+y+++++++l+e+ ++kls +d++ +++v+++++wL+ + +
F44E5.5 542 QLEAYAFQIKQALDEY--SSKLSTEDASRAKEAVDETLRWLDSN----SL 585
aekeeikakteeLqkvvqkigekmyq<-*
aek+ei+ak +eL++v+q i +km+q
F44E5.5 586 AEKDEIEAKDKELKSVCQSILTKMHQ 611