Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F44F4.4
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Query: F44F4.4 CE01000 locus:ptr-8 status:Partially_confirmed TR:Q20404 protein_id:CAA85455.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Patched Patched family 1448.7 0 1
HSP90 Hsp90 protein 6.3 0.61 1
Ribosomal_L37ae Ribosomal L37ae protein family 5.9 3.7 1
RolB_RolC RolB/RolC glucosidase family 4.3 5.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
HSP90 1/1 100 116 .. 1 20 [. 6.3 0.61
Ribosomal_L37ae 1/1 544 555 .. 80 91 .] 5.9 3.7
RolB_RolC 1/1 631 671 .. 1 41 [. 4.3 5.2
Patched 1/1 42 889 .. 1 957 [] 1448.7 0
Alignments of top-scoring domains:
HSP90: domain 1 of 1, from 100 to 116: score 6.3, E = 0.61
*->EYLEErRlKelvKKySeFIg<-*
LEE+RlKe+v K S+FI+
F44F4.4 100 --LEEQRLKEVV-KVSDFIS 116
Ribosomal_L37ae: domain 1 of 1, from 544 to 555: score 5.9, E = 3.7
*->sairRLrelkEs<-*
s+++RL+elkE+
F44F4.4 544 SNVERLVELKEK 555
RolB_RolC: domain 1 of 1, from 631 to 671: score 4.3, E = 5.2
*->meytrprfqprdltlitdsdeLkreLeaAfedYrsflqktL<-*
+ ++ +f+ dl + +++++L ++ + A+e++++++++t+
F44F4.4 631 KFMFTTGFHGQDLKDWNKRGQLLKRWRGAVEEFKDDFNTTV 671
Patched: domain 1 of 1, from 42 to 889: score 1448.7, E = 0
*->vlsskilytftpsDirksytergvrsedeplverkFfpgdgkpiarf
v+s+k+++t++ s+i+ +y++++++s++e++++++F+++dg+ i+++
F44F4.4 42 VMSIKLALTPKVSAID-GYASDDSMSRHEFKTFQQFLDSDGPGITTA 87
viitakarnsedytrpNiLdikyLnevvqvndfiltnvtipvsgalkkit
+ i+++++n+ ++L++++L+evv+v+dfi+tn++++vsg ++
F44F4.4 88 ILIRSSITNG------SLLEEQRLKEVVKVSDFISTNFKLNVSG----VE 127
lsfkdlCssfcdincpvnqhyngLdtlailrsnlhn...sridltYPtmt
++f+++C++fc++n+pv+q+yng l+il++n++++ ++ridl+YPt++
F44F4.4 128 KNFNQFCRGFCQANEPVRQYYNG---LQILGKNQTDgisKRIDLSYPTSN 174
ffgtkiylgpnfgGVkldpgeNdvekllDsltklklvdtkseegniksvk
ffg+k++l+pnf+G++++p e+++++s++
F44F4.4 175 FFGRKFSLIPNFFGISMSP----------------------EGQHLNSSN 202
aivLyyrlkrdpeeveedskeWElsledyleneyksdshievtifsdqvl
+ivLy+r++r+p+++++++k+WEl+++d++++ey+sd +i+v+++s++v+
F44F4.4 203 LIVLYFRAERYPDWSTKTVKQWELRVRDHFAKEYSSD-LIIVDVMSQTVV 251
edElvrngltlvPffvvgFaiLvtFsvltsvvlavrrsgslhidwvssKp
e+E+vr+gl+l+Pf++vgF+i+ +F+++t++++av ++++++++++K+
F44F4.4 252 ESEIVRAGLSLQPFLIVGFVIMSIFCTVTTMFSAV---YLYSQKATFNKV 298
iLAilgvltPlmAivsAfGlLfwlGfrFnsIlcVmPFLVLGAIGVDDmFL
+L+i+++++P+mA+++A+G+Lf++G++F++I+c++PFLVL AI+VDD+FL
F44F4.4 299 ALSIIACINPFMACGTAMGILFFCGVTFSPIMCITPFLVL-AISVDDSFL 347
MvhaWqrttrslssrarK.vvkkRmgevlvEaGPSItITSlTnvLSFgIG
M+haW+r++++++++++K++++++mgevlvE+GP+I+I+++Tn+L+F+IG
F44F4.4 348 MLHAWNRLESWRTAPLDKpMREHMMGEVLVETGPAISISAFTNMLAFTIG 397
aiTptPeIqlFCiytavAiffdfiYQlTFFaAilaiagkyEmkgrhslfl
aiT++PeI++FC+++a+Aif+d++YQ TF++A++++ g+++ ++
F44F4.4 398 AITSPPEIRIFCFGNAAAIFMDMFYQATFYTACMTLLGDTK-NS------ 440
riTakavdaaetespkklkkqrlksrgsakaaPvekegeknSkfsevees
+ s+++++
F44F4.4 441 ---------------------EGVSEKTKR-------------------- 449
leseksssdssksheaeqktavvkfflniYcpfllnpkvrvcvllvyvvY
++e++ +vv +fl++Y+++++n++v++ ++lv++v+
F44F4.4 450 ------------IQERMG--NVVGRFLKWYVNAISNIFVSFGIVLVWAVF 485
laiaiYGctnlkegLdPskLllkDSpLveilrlrekhvwpyGsqvtVvVN
+++a+ G+t+l+++L+Psk++lkDSp+++++rlr+++v+py+++v+V+VN
F44F4.4 486 IGFAVLGLTRLHVELRPSKFFLKDSPMLYMDRLRTNEVVPYYTPVHVIVN 535
NPPDLtnpenrdrllemvdeFEntpyalGkWEnsTkfWLrdYekFlsssE
NP+DLtn++n++rl e+++++E++p+a+G+ +sTkf+L+d+++++ss
F44F4.4 536 NPGDLTNDSNVERLVELKEKLEHMPNAIGA--PSTKFFLDDFVQYRSS-- 581
einleaseledeeeeidevdpvsvvvkdkqewifydllewFlkspgfshW
+a+e+e++++e+d +e+ +++++e+Fl++p+fs+W
F44F4.4 582 ----FAEEIEMDIAEDD------------SES-EKSDIEQFLEWPEFSFW 614
qgdlvwdnktdketteikkFrFttgyHgkdlstwtdRtkllkewRgvAde
+g+l++dn+t ++++++kF+Fttg+Hg+dl++w++R++llk+wRg ++e
F44F4.4 615 RGFLRFDNQT--HPHNVTKFMFTTGFHGQDLKDWNKRGQLLKRWRGAVEE 662
ypddFNVTVFdedafFlDqilsilpttiQsiiwtlicMavVCflFIpnpi
++ddFN+TVF+edafFlD+i+si+++t+Q++++t+i++++VCflFI+++
F44F4.4 663 FKDDFNTTVFTEDAFFLDMIDSIPTVTWQTTLATFIFVSLVCFLFISDIL 712
tvfvitvsiaSIdiGVfGfLSLWGVdLDPisMitiIMSIGFSVDfsAHia
tv++++v+++++++GVfG+LSL GV+LDP++M++ IM+IGFSVD++AH+a
F44F4.4 713 TVMIVSVATLVTSVGVFGYLSLLGVTLDPVIMSIAIMCIGFSVDIPAHVA 762
YhFyrskgsesrs..........................ikkiplktpde
+hFy++k+++++s+++++++++ ++++ +++++++++++++++++++++
F44F4.4 763 FHFYAAKAKKHASshsqpsphqvtspdivhststtsssdSSISTPNSFET 812
RvadALealGWPviQAalSTiLcvlvLlFVpsYmvvvFfKTifLVVvlGl
++++AL+++G+PviQA++ST++c l+L F+++Ym+++F+ + +L+V+l+l
F44F4.4 813 NLNFALSSVGFPVIQAGVSTDFCALPLGFMELYMAKMFALSLTLCVSLSL 862
LHGLifLPilLslfvtssrifggdviirtsnakikkpseq<-*
+HGLi++P+lLs++++ ++++ k+++ +
F44F4.4 863 IHGLIVIPALLSVQHH-------------IVHAVKRCFGR 889