Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F44F4.6
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Query: F44F4.6 CE01002 locus:gly-1 beta-1,6-N-acetylglucosaminyltransferase status:Confirmed TR:Q20406 protein_id:CAA85457.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Branch Core-2/I-Branching enzyme 303.8 3.5e-92 1
DUF32 Domain of unknown function DUF32 6.1 0.55 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF32 1/1 7 19 .. 237 249 .] 6.1 0.55
Branch 1/1 129 319 .. 1 238 [] 303.8 3.5e-92
Alignments of top-scoring domains:
DUF32: domain 1 of 1, from 7 to 19: score 6.1, E = 0.55
*->rTIRnsvlkligp<-*
+TIRn ++ ++++
F44F4.6 7 KTIRNLFRLKFCC 19
Branch: domain 1 of 1, from 129 to 319: score 303.8, E = 3.5e-92
*->iAYlrvVykdyeqrlerlLsasYHPqNqyCfhlDekSpeefkeeLak
+AY++vVyk ++q ++ ++s +Y+Pq+++C+ +D +Sp+e+k+
F44F4.6 129 LAYGLVVYKTIVQ-VLTQMSLFYQPQHMFCITVDDQSPNEYKS---- 170
dVrvralascfpNVfVlgkeepvtsgGhsilaahlnClkiLlklpsWdWd
++al scfpN++V++ ep ++g+++il++++ C+++L+k+++ +W+
F44F4.6 171 --VIQALPSCFPNMHVFIG-EPSQWGSFGILKNVYTCFNWLSKSKQ-KWK 216
yfinLsahDyPlkTndELvrifksLnganNFIdhtseiGwkeskraKpii
y+++Ls++D+P++Tn+E+vrifk+Lng++N
F44F4.6 217 YYQYLSGTDLPIRTNLEMVRIFKALNGSMN-------------------- 246
vdpklfkneksdvwkkhyvvdklifwatekrplptslklfkGSawvvLSR
d f+++++++ ++ + +++++k+S++vv++R
F44F4.6 247 TDVSTFEVDRYKN----------------MEGVLPPMPVYKSSMSVVVPR 280
afVeymiwgwdnlprtLlqyytntyspdEgyfhTlqcNpdl<-*
+ ++y+i +++++++Ll+y++ t++pdE++++T++++p l
F44F4.6 281 EGADYLI--SSPRVQKLLKYLSKTWIPDESFWSTVLGSPAL 319