Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F44F4.6
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Query:  F44F4.6  CE01002  locus:gly-1 beta-1,6-N-acetylglucosaminyltransferase status:Confirmed TR:Q20406 protein_id:CAA85457.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
Branch   Core-2/I-Branching enzyme                      303.8    3.5e-92   1
DUF32    Domain of unknown function DUF32                 6.1       0.55   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF32      1/1       7    19 ..   237   249 .]     6.1     0.55
Branch     1/1     129   319 ..     1   238 []   303.8  3.5e-92

Alignments of top-scoring domains:
DUF32: domain 1 of 1, from 7 to 19: score 6.1, E = 0.55
                   *->rTIRnsvlkligp<-*
                      +TIRn ++ ++++
     F44F4.6     7    KTIRNLFRLKFCC    19

Branch: domain 1 of 1, from 129 to 319: score 303.8, E = 3.5e-92
                   *->iAYlrvVykdyeqrlerlLsasYHPqNqyCfhlDekSpeefkeeLak
                      +AY++vVyk ++q ++ ++s +Y+Pq+++C+ +D +Sp+e+k+
     F44F4.6   129    LAYGLVVYKTIVQ-VLTQMSLFYQPQHMFCITVDDQSPNEYKS---- 170

                   dVrvralascfpNVfVlgkeepvtsgGhsilaahlnClkiLlklpsWdWd
                      ++al scfpN++V++  ep ++g+++il++++ C+++L+k+++ +W+
     F44F4.6   171 --VIQALPSCFPNMHVFIG-EPSQWGSFGILKNVYTCFNWLSKSKQ-KWK 216

                   yfinLsahDyPlkTndELvrifksLnganNFIdhtseiGwkeskraKpii
                   y+++Ls++D+P++Tn+E+vrifk+Lng++N
     F44F4.6   217 YYQYLSGTDLPIRTNLEMVRIFKALNGSMN-------------------- 246

                   vdpklfkneksdvwkkhyvvdklifwatekrplptslklfkGSawvvLSR
                    d   f+++++++                ++ +  +++++k+S++vv++R
     F44F4.6   247 TDVSTFEVDRYKN----------------MEGVLPPMPVYKSSMSVVVPR 280

                   afVeymiwgwdnlprtLlqyytntyspdEgyfhTlqcNpdl<-*
                   + ++y+i  +++++++Ll+y++ t++pdE++++T++++p l
     F44F4.6   281 EGADYLI--SSPRVQKLLKYLSKTWIPDESFWSTVLGSPAL    319



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