Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F45E1.6
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Query: F45E1.6 CE01943 Histone H3 status:Confirmed SW:Q10453 protein_id:AAB04902.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
histone Core histone H2A/H2B/H3/H4 100.0 4.4e-27 1
TAF TATA box binding protein associated factor ( 2.7 5.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TAF 1/1 114 129 .. 51 68 .] 2.7 5.9
histone 1/1 17 135 .. 1 117 [] 100.0 4.4e-27
Alignments of top-scoring domains:
TAF: domain 1 of 1, from 114 to 129: score 2.7, E = 5.9
*->HsKRtkLTvsDidsAqLk<-*
H+KR + ++ Di A +
F45E1.6 114 HAKRVTIMPKDIQLA--R 129
histone: domain 1 of 1, from 17 to 135: score 100.0, E = 4.4e-27
*->agkkgagkk..........kkrsrsrkaglqfyvgRvlkqlhpdtgi
++k+ a+k+ +++ ++++++k+++ +++++++++R+++ ++++t++
F45E1.6 17 PRKQLATKAarksapttggVKKPH--RYRPGTVALREIRRYQKSTEL 61
ssragaiansyvadvlErlaaEaleLagnakkdtKkkRitpreiqlAvrl
++r+ +++ ++v+++++ +++++ +++++a+ ++ +++ e++l++++
F45E1.6 62 LIRKLPFQ-RLVREIAQDFKTDL-RFQSAAIGAL----QEASEAYLVGLF 105
dlelelakhAvtegtkaVtpniskrllgkk<-*
++++++a+hA++++++++++++++r++g++
F45E1.6 106 EDTNLCAIHAKRVTIMPKDIQLARRIRGER 135