Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F45E10.1b
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Query: F45E10.1b CE31347 locus:unc-53 adaptor protein unc-53 status:Partially_confirmed TN:CAD44133 protein_id:CAD44133.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
CH Calponin homology (CH) domain 27.7 3.1e-06 1
bZIP bZIP transcription factor 8.8 0.55 1
AIG1 AIG1 family 5.7 2 1
HALZ Homeobox associated leucine zipper 5.2 6 2
AAA ATPase family associated with various 4.4 2.7 1
TK_herpes Thymidine kinase from herpesvirus 4.0 6.4 1
G-gamma GGL domain 3.9 7.7 1
IRF Interferon regulatory factor transcrip 3.8 7.7 1
Hepatitis_core Hepatitis core antigen 2.8 7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
IRF 1/1 27 44 .. 97 114 .] 3.8 7.7
CH 1/1 7 115 .. 1 106 [] 27.7 3.1e-06
HALZ 1/2 110 131 .. 24 45 .] 4.2 12
Hepatitis_core 1/1 376 386 .. 148 158 .] 2.8 7
G-gamma 1/1 1059 1075 .. 1 17 [. 3.9 7.7
HALZ 2/2 1053 1076 .. 8 31 .. 8.5 0.61
bZIP 1/1 1051 1078 .. 27 54 .. 8.8 0.55
AIG1 1/1 1260 1273 .. 1 14 [. 5.7 2
TK_herpes 1/1 1266 1288 .. 1 22 [. 4.0 6.4
AAA 1/1 1261 1331 .. 1 72 [. 4.4 2.7
Alignments of top-scoring domains:
IRF: domain 1 of 1, from 27 to 44: score 3.8, E = 7.7
*->rSrldvsepykVYRlLPp<-*
+S+ d+s+ ++ YRl+
F45E10.1b 27 KSIRDISNDFRDYRLVSQ 44
CH: domain 1 of 1, from 7 to 115: score 27.7, E = 3.1e-06
*->sqekellrWinsvlagypgkkstlPippvpvtnfftdwlkDGlaLca
+ ++ W+n++l + + + ++++ + d++ D ++ +
F45E10.1b 7 ELIPIYTDWANRHLSK-GSLS-------KSIRDISNDFR-DYRLVSQ 44
Llnklr....................eNlnlaldaaekeGlgivlvlldp
L+n++ + ++ ++ +++ + +++ + l+++ld +++ Gl++ +l
F45E10.1b 45 LINVIVpinefspaftkrlakitsnlDGLETCLDYLKNLGLDC-SKLTK- 92
eDiveaegnpdPDeklvltylwqLirrfq<-*
Di + gn vl +l L + q
F45E10.1b 93 TDIDS--GNL----GAVLQLLFLLSTYKQ 115
HALZ: domain 1 of 2, from 110 to 131: score 4.2, E = 12
*->LqkendeLrAevlslkeklqde<-*
L +++Lr++++ +k+ +q++
F45E10.1b 110 LSTYKQKLRQLKKDQKKLEQLP 131
Hepatitis_core: domain 1 of 1, from 376 to 386: score 2.8, E = 7
*->YRpkdAPilea<-*
YR dAPi++
F45E10.1b 376 YRKTDAPIISQ 386
G-gamma: domain 1 of 1, from 1059 to 1075: score 3.9, E = 7.7
*->vdqlrkeveqLrkelsr<-*
v +l+ e++qL+ke+++
F45E10.1b 1059 VNKLKTENKQLKKEVDK 1075
HALZ: domain 2 of 2, from 1053 to 1076: score 8.5, E = 0.61
*->elLKrcydsLkeendsLqkendeL<-*
++L+ + Lk en L+ke+d+L
F45E10.1b 1053 DVLRETVNKLKTENKQLKKEVDKL 1076
bZIP: domain 1 of 1, from 1051 to 1078: score 8.8, E = 0.55
*->eieeLeekveeLeaeNkaLrkelerLkk<-*
e++ L+e v +L++eNk+L+ke+++L++
F45E10.1b 1051 EVDVLRETVNKLKTENKQLKKEVDKLTN 1078
AIG1: domain 1 of 1, from 1260 to 1273: score 5.7, E = 2
*->rnIVLVGRTGNGKS<-*
r++VL G TG GKS
F45E10.1b 1260 RRLVLAGATGIGKS 1273
TK_herpes: domain 1 of 1, from 1266 to 1288: score 4.0, E = 6.4
*->GphGiGKTTTaraLaaassar.g<-*
G+ GiGK+ a++Laa s+r++
F45E10.1b 1266 GATGIGKSKLAKTLAAYVSIRtN 1288
AAA: domain 1 of 1, from 1261 to 1331: score 4.4, E = 2.7
*->gvLLyGPPGtGKTlLAkavAkelg.........vpfisisg...sel
+ L G G GK+ LAk++A ++++++++++ isi +++ el
F45E10.1b 1261 RLVLAGATGIGKSKLAKTLAAYVSirtnqsedsIVNISIPEnnkEEL 1307
vskyvGesekrvralfelArkslkkaaPspiiFIDEi<-*
+ + e+r+ ++++ + + i+++D i
F45E10.1b 1308 L-----QVERRLEKILRSKESC--------IVILDNI 1331
[output cut off at A = 10 top alignments]