Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F45E4.3a
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Query: F45E4.3a CE24980 status:Partially_confirmed TR:Q9BI66 protein_id:AAK29821.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
C2 C2 domain 88.7 3.7e-24 1
RseA_C Anti sigma-E protein RseA, C-terminal domain 6.3 4.2 2
ferritin Ferritin-like domain 5.3 2.9 1
PDZ PDZ domain (Also known as DHR or GLGF) 5.1 6 1
Ocnus Janus/Ocnus family (Ocnus) 4.8 6.5 1
MyTH4 MyTH4 domain 4.7 6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
MyTH4 1/1 212 227 .. 103 118 .] 4.7 6
RseA_C 1/2 494 512 .. 49 67 .] 1.4 96
ferritin 1/1 662 682 .. 1 22 [. 5.3 2.9
RseA_C 2/2 700 712 .. 1 13 [. 4.1 17
Ocnus 1/1 878 891 .. 101 115 .] 4.8 6.5
PDZ 1/1 882 969 .. 1 84 [] 5.1 6
C2 1/1 1039 1128 .. 1 88 [] 88.7 3.7e-24
Alignments of top-scoring domains:
MyTH4: domain 1 of 1, from 212 to 227: score 4.7, E = 6
*->GsRkypPsrlEieAik<-*
++Rk+ + ++EieA++
F45E4.3a 212 IQRKQRLEATEIEANQ 227
RseA_C: domain 1 of 2, from 494 to 512: score 1.4, E = 96
*->elqlrrwsesrlpqylrqh<-*
++ ++ +s+ r+ +y +qh
F45E4.3a 494 DYPRGTRSDVRDFTYRQQH 512
ferritin: domain 1 of 1, from 662 to 682: score 5.3, E = 2.9
*->eaaLNeqlnlElyAsylYlsma<-*
+ +L +q+n+ ++ s++Y++++
F45E4.3a 662 RSRLVDQMNQGYN-SNQYHHHS 682
RseA_C: domain 2 of 2, from 700 to 712: score 4.1, E = 17
*->pelPvlqTlPfnG<-*
++l+++q +P+ +
F45E4.3a 700 NQLAQQQGIPMQN 712
Ocnus: domain 1 of 1, from 878 to 891: score 4.8, E = 6.5
*->keILlswtK.YkdykI<-*
k+ILl t +Yk+++I
F45E4.3a 878 KRILL--TRsYKHHNI 891
PDZ: domain 1 of 1, from 882 to 969: score 5.1, E = 6
*->evtleke.vkrgglGfsikggsdk.....givvsevlpGsgaAeagG
+++ k++++ + lG++++gg+ + +++ +++vs ++ + G
F45E4.3a 882 LTRSYKHhNIYNDLGVRVVGGKRQmngelSAYVSQLHST-ANNQTLG 927
rLkeGDvIlsvNGqdvenmsheravlaikgsggsevtLtvlRd<-*
+k+GD +++ NG +++ + e++ + +s+g e+ ++++
F45E4.3a 928 QIKIGDEVVEWNGILLRGKTFEEVERIVNKSHG-EIEMVIRTY 969
C2: domain 1 of 1, from 1039 to 1128: score 88.7, E = 3.7e-24
*->LrVtvieAknLppkDkkngksDPYVkvslggdpkd.qkkkTkvikkt
L+ ++i+A++L+ +D + + ++P+Vkv+l++ +k ++k++T+ + +
F45E4.3a 1039 LVAKIIRARGLKSRDQSRSAPNPFVKVYLLPGRKVsHKRRTRFVDSS 1085
lNPvWNEtFtFevpppdlqe.tLeitVyDydrfgrddflGevs<-*
+ P+WN++++++v p++l+ Le+tV+Dy r d lG v+
F45E4.3a 1086 CAPEWNQVLEYQVAPHTLNTmFLEFTVCDYQRDVDDLPLGNVQ 1128