Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F46C5.3
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Query: F46C5.3 CE28935 zinc metalloprotease status:Partially_confirmed TR:Q20459 protein_id:CAA91045.3
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Astacin Astacin (Peptidase family M12A) 214.9 6.3e-66 1
EGF EGF-like domain 7.5 2.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Astacin 1/1 48 238 .. 1 200 [] 214.9 6.3e-66
EGF 1/1 263 274 .. 29 45 .] 7.5 2.1
Alignments of top-scoring domains:
Astacin: domain 1 of 1, from 48 to 238: score 214.9, E = 6.3e-66
*->rrWpngsGiVvIPYvisssysgrersliraAmrhwenkTCirFvprt
+rWpn++ +PY++ + ++ + +r A+++ + TCirF+ +
F46C5.3 48 YRWPNNT----VPYYVGNV-TSTIKKSVRLAIEELQAWTCIRFQNVN 89
sa..gendylrffsgdGCwSyVGrrggGaeQevSlganGCdyfGtivHEl
++ ++ d +r+++ + C S +Gr+ G Q+vSl ++C +Gt++HEl
F46C5.3 90 -EkySDGDSVRIVDLGSCSSPIGRQQIGT-QDVSLT-KNCWGMGTAIHEL 136
gHALGFwHEQsRpDRDdyVsInwqNIdpgqeynFdKydpdqvdslGvPYD
+HA+G+ H+QsR+DR +y +I+ qNId+ + nF+ +p+ +l vPYD
F46C5.3 137 MHAIGIEHTQSRSDRNRYLDILAQNIDNRDLPNFELLSPRLWANL-VPYD 185
YgSiMHYgpyaFSkngskpTIvpkdnkvyqatiGQReglSflDikkiNkl
YgS+MHY++++FS+ + T++pkd + t+G + + f+D +iN+
F46C5.3 186 YGSVMHYSADSFSNKDDEQTMLPKDRS-FIETMGSMI-PNFYDFDQINQY 233
YnCpe<-*
Y+C +
F46C5.3 234 YQCYD 238
EGF: domain 1 of 1, from 263 to 274: score 7.5, E = 2.1
*->CeCppGdyylsytGkrC<-*
C Cp+G y G+ C
F46C5.3 263 CNCPMG-----YGGDLC 274