Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F46E10.1
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Query: F46E10.1 CE20812 long-chain-fatty-acid-CoA ligase status:Partially_confirmed TR:Q9UAV8 protein_id:AAD14712.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
AMP-binding AMP-binding enzyme 415.9 3.7e-121 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AMP-binding 1/1 95 534 .. 1 373 [] 415.9 3.7e-121
Alignments of top-scoring domains:
AMP-binding: domain 1 of 1, from 95 to 534: score 415.9, E = 3.7e-121
*->TYrELderanrlAaaLralGvgpGdrVaillpnspelvvailAvlka
TY+++ + a+ lA +L++lG+++Gdr++i+ pn+ e+ + +A + a
F46E10.1 95 TYSQVATDAENLACGLLHLGLKKGDRIGIWGPNTYEWTTTQFASALA 141
GaayvPldpsypaerlayiledsgakllltddallarl............
G++ v ++psy e+l+y +e +g+++l+t ++++ + ++ +++
F46E10.1 142 GMVLVNINPSYQSEELRYAIEKVGIRALITPPGFKKSNyyqsikdilpev 191
..................................................
+ +++++++ ++ + +++++ +++ + +++ + +++++
F46E10.1 192 tlkepgksgitsrnftcfqhlimfdeedkiypgawkytdvmkmgteedrh 241
s.e.p.ppvdpddlAyiiYTSGTTGkPKGVmltHrnlvnlvaala.rf.l
++ +++++pdd + i+YTSGTTG+PKG+ ltH+n++n++ ++ r ++
F46E10.1 242 HlSkIeRETQPDDSLNIQYTSGTTGQPKGATLTHHNVLNNAFFVGlRAgY 291
.pddaervlllapplyhfdgsvwelfgpLlaGatlvlvpkftryrdp.al
++ ++++ ++plyh++g+v++++++L + t+v++ + ++ + a
F46E10.1 292 sEKK--TIICIPNPLYHCFGCVMGVLAALTHLQTCVFPAPSFD---AlAA 336
ldliekykvTvlflvPtllrlllaape....dlssLrlvlsgGealppel
l++i ++k+T+l+++Pt++ + ++pe + + s+r + +G+++p +l
F46E10.1 337 LQAIHEEKCTALYGTPTMFIDMINHPEyanyNYDSIRSGFIAGAPCPITL 386
lrrlrerfgsggvrlvngYGpTEttvvatanppg.d....pgsiGrPlpg
+rrl + + ++ + +YG TEt++v++++ +++++ + s+G+ +++
F46E10.1 387 CRRLVQDMH--MTDMQVCYGTTETSPVSFMSTRDdPpeqrIKSVGHIMDH 434
vevyvlDeegrpvppGevGELyirGwpgvarGYlnrPelTaerFvadgwg
e+ ++D + +vp G+ GE+ +rG +v+r Y+n +e T++ +++d w
F46E10.1 435 LEAAIVDKRNCIVPRGVKGEVIVRG-YSVMRCYWNSEEQTKKEITQDRW- 482
RmYrTGDlarwdpDGyleilGRiDdqvKirGerIepgEiEavLlehPgVa
Y+TGD+a+++++G++ i+GR++d++ ++Ge+I+p+E+E+ L +h V+
F46E10.1 483 --YHTGDIAVMHDNGTISIVGRSKDMIVRGGENIYPTEVEQFLFKHQSVE 530
eAaV<-*
++ +
F46E10.1 531 DVHI 534