Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F46F6.2
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Query: F46F6.2 CE31703 Protein kinase C terminal domain status:Partially_confirmed TR:O17874 protein_id:CAA90339.4
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 247.2 2.2e-70 1
HR1 Hr1 repeat 78.9 3.1e-22 1
pkinase_C Protein kinase C terminal domain 53.5 3.3e-15 1
RNase_P_p30 RNase P subunit p30 6.6 1.5 1
DNA_ligase_N NAD-dependent DNA ligase adenylation 4.7 1.7 1
Ureidogly_hydro Ureidoglycolate hydrolase 4.4 2.4 1
NiFeSe_Hases Nickel-dependent hydrogenase 3.1 1.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DNA_ligase_N 1/1 66 81 .. 1 16 [. 4.7 1.7
RNase_P_p30 1/1 93 110 .. 1 18 [. 6.6 1.5
NiFeSe_Hases 1/1 176 184 .. 1 9 [. 3.1 1.7
Ureidogly_hydro 1/1 208 220 .. 1 13 [. 4.4 2.4
HR1 1/1 159 232 .. 1 87 [] 78.9 3.1e-22
pkinase 1/1 684 943 .. 1 294 [] 247.2 2.2e-70
pkinase_C 1/1 944 1008 .. 1 62 [. 53.5 3.3e-15
Alignments of top-scoring domains:
DNA_ligase_N: domain 1 of 1, from 66 to 81: score 4.7, E = 1.7
*->eeaqqeieeLrelirk<-*
+ +qqe++eLr +irk
F46F6.2 66 SSIQQEALELRSVIRK 81
RNase_P_p30: domain 1 of 1, from 93 to 110: score 6.6, E = 1.5
*->ysRitIkaedprqskvrr<-*
ysRi+++++d+rqs+ +r
F46F6.2 93 YSRIKLITSDRRQSEFLR 110
NiFeSe_Hases: domain 1 of 1, from 176 to 184: score 3.1, E = 1.7
*->RGLEkILkG<-*
RGLE++L+G
F46F6.2 176 RGLEQFLRG 184
Ureidogly_hydro: domain 1 of 1, from 208 to 220: score 4.4, E = 2.4
*->MkklvaepLTkEA<-*
M + ++e+L++EA
F46F6.2 208 MLRMQIERLSQEA 220
HR1: domain 1 of 1, from 159 to 232: score 78.9, E = 3.1e-22
*->lllerLrkkLevElkireGaEkllRltsdekLlllkketkevkrkak
++l++L+ +Le+Elk+++G+E++lR ++d++ k++++
F46F6.2 159 SKLVILQLELEKELKVKRGLEQFLRGAPDKS-----------KVHGD 194
seaeeklvESnqklelLkqsLerLeelhqdsdpegesdte<-*
s++++++ S++k+++L++++erL++++++++ e+++++e
F46F6.2 195 SQSLLDD--SRAKIAMLRMQIERLSQEAPAVEGEPKTKVE 232
pkinase: domain 1 of 1, from 684 to 943: score 247.2, E = 2.2e-70
*->yelleklGeGsfGkVykakhkdktgkiVAvKilkk....ekesikek
++l+ +lG+G+fGkV + +h +t +A+K+lkk++ ++ ++++
F46F6.2 684 FRLISVLGRGHFGKVILSQHN-PTSNYYALKVLKKgdilGRDEVES- 728
rflrEiqilkrLs...HpNIvrligvfedtddhlylvmEymegGdLfdyl
+ E +i s+ +Hp++v+l g f+ t++h+ ++mEy +gGdL++++
F46F6.2 729 -LMVEKRIFEVSSrarHPFLVNLNGCFQ-TNEHVFFCMEYSMGGDLMRHI 776
rrnggplsekeakkialQilrGleYLHsngivHRDLKpeNILldendgtv
++ ++e +++a ++ Gl++LH ++i++RD+K +N+Lld++ g v
F46F6.2 777 HDDV--FDEVRGCFYAACVVLGLDFLHKHNIIYRDIKLDNLLLDRE-GYV 823
KiaDFGLArlle.sssklttfvGTpwYmmAPEvilegrgysskvDvWSlG
KiaDFGL+++ ++ k++tf+GTp++ APEv l+++ y++++D+W lG
F46F6.2 824 KIADFGLCKENMgPFDKTSTFCGTPEFL-APEV-LSDSSYTRAIDWWGLG 871
viLyElltggplfpgadlpaftggdevdqliifvlklPfsdelpktridp
v+++E+l g ++Pfs+ d
F46F6.2 872 VLIFEMLVG--------------------------EPPFSG-------DD 888
leelfriikrpglrlplpsncSeelkdLlkkcLnkDPskRpG..satake
ee+f+ i + + p+++S e + +++++L+k P+kR+G + + a++
F46F6.2 889 EEEIFDSIIS--EDVRYPRYLSVESIAIMRRLLRKVPEKRLGygERDAED 936
ilnhpwf<-*
i+ +f
F46F6.2 937 IKIQRFF 943
pkinase_C: domain 1 of 1, from 944 to 1008: score 53.5, E = 3.3e-15
*->reId..WdkLEnkeiePPFKPkiksprDtsNFDkeFTrekPvLTPvD
r+I+ +WdkL+n+ei PPF+P+i +p+D+sNFD eFT ek + + +
F46F6.2 944 RHISweWDKLLNREIRPPFQPQIRNPEDVSNFDLEFTQEKARFSAAS 990
svl.irsiDQeeFrGFSY<-*
s+ +i++ DQ F +F +
F46F6.2 991 STRpITEADQRLFNNFDF 1008