Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F46F6.1a
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Query: F46F6.1a CE18697 status:Partially_confirmed TR:Q20473 protein_id:CAA90338.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DENN DENN (AEX-3) domain 274.2 1.7e-78 1
dDENN dDENN domain 89.8 5.6e-23 1
uDENN uDENN domain 61.7 9.8e-16 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
uDENN 1/1 2 87 .. 1 288 [] 61.7 9.8e-16
DENN 1/1 90 284 .. 1 252 [] 274.2 1.7e-78
dDENN 1/1 314 383 .. 1 81 [] 89.8 5.6e-23
Alignments of top-scoring domains:
uDENN: domain 1 of 1, from 2 to 87: score 61.7, E = 9.8e-16
*->mgsrikndssrLfDyFvvvGldkktglvddsqsgagcdlepledvss
+++r+++d+ +L+D+F++ ++k+
F46F6.1a 2 TYGRYRADVATLYDVFCELDAPKP----------------------- 25
ediegeteksdkrdasgieSsrakentfasrqnsGsrsalkkLsydpslS
F46F6.1a - -------------------------------------------------- -
sNdiekkkkdnrssavrsLprrsLssgtgngasvNnsSgnatltyrraea
F46F6.1a - -------------------------------------------------- -
ganrvnlvvTnlkvilaasgeanPhalflilktlpkgdvgsdvllcyKkq
F46F6.1a - -------------------------------------------------- -
yiArrsylPeiLrqFPeddhddeplpeeeerllKfSYDdipmFCfPdgle
++l+++ +q+P+d+hd+ + + ++++F+fP++l+
F46F6.1a 26 ----GEKLAILRLQYPDDFHDPAIVK------------SVQQFAFPCQLR 59
sstvrrvdnkksppspqffsFvLTdeDsdgsrryGfCllfy<-*
+ ++++++ F + +D ++ ++ f +++y
F46F6.1a 60 -----------EVEVDAVQLFSFVLTD--SNSKFSFGFCRY 87
DENN: domain 1 of 1, from 90 to 284: score 274.2, E = 1.7e-78
*->rapkciCllSrlPffetFrkvLnelhrlsgssqaslappsslsgkkr
r+++ciC+lS ++++++F+k Ln ++ ++gs+q +
F46F6.1a 90 RTDTCICFLSGFFWPNVFFKALNDISLVIGSAQRED----------- 125
pTefvnetslaasyLqvyqlkslAigSsivlhdlreleslisnllsevpl
+es++++++++ +
F46F6.1a 126 ------------------------------------VESVLTKFYHT-DI 138
PapGktirvfsvvsssglieAPpDH.lrpldtlllalpaplpspledfdl
P+ + ++r+ + +++g H++r+++++ ++++ +lp +d+++
F46F6.1a 139 PNIDEYLRFADSNQTDG-------HnYRVVFAEKIPDHTRLPTLGSDKFF 181
hlLFkaLgvenvlqlfaaaLlErrILflSrklsrLsacvhAlvaLLYPfr
++++a++++++l++fa++L ErrILf+ rk + Ls+c hA+ +LLYP++
F46F6.1a 182 LEFYNAIDPRQMLAIFASLLKERRILFTGRKVGSLSSCLHAVSMLLYPMC 231
WqhvYIPvLPasLlsAEdvLeAPtPYliGvChssfleqvrdlplei.dVv
Wq+v+I++LP+sL+ d+++AP+PYliGv + +le+ r + ++i++Vv
F46F6.1a 232 WQSVFITILPESLV---DMVMAPMPYLIGV-PKTVLENARLNIRDIgEVV 277
vVDLDtn<-*
+VD+D++
F46F6.1a 278 IVDIDEK 284
dDENN: domain 1 of 1, from 314 to 383: score 89.8, E = 5.6e-23
*->lddqvreaFLrfFNasllggYrnflryprkapewegardevvtFqke
+dd+++++FLr++ ++l+g+Y++ ++++++ e+++F+ke
F46F6.1a 314 MDDTFAKHFLRAM-VMLFGDYTSGFTGDTP---------ETLVFSKE 350
aFlksrprssqRpFlsrfletQAVemFaeFIeeR<-*
+F+ ++++s+q +++s++l+ +V+++++FI++R
F46F6.1a 351 RFVVQQKPSYQ-AYVSSLLGADGVQYLERFIHDR 383