Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F47B3.1
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Query: F47B3.1 CE10616 protein-tyrosine phosphatase status:Partially_confirmed TR:O01557 protein_id:AAB52356.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Y_phosphatase Protein-tyrosine phosphatase 315.6 5.9e-91 1
DSPc Dual specificity phosphatase, catalytic 15.3 0.0051 1
DUF252 Putative tyrosine phosphatase family 5.0 1.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DSPc 1/1 250 280 .. 95 125 .. 15.3 0.0051
DUF252 1/1 263 281 .. 110 128 .. 5.0 1.9
Y_phosphatase 1/1 93 327 .. 1 274 [] 315.6 5.9e-91
Alignments of top-scoring domains:
DSPc: domain 1 of 1, from 250 to 280: score 15.3, E = 0.0051
*->avdFIdkarqkggkVLVHCqAGiSRSAtlii<-*
a++ +++ r ++ ++LVHC AGi R++t+++
F47B3.1 250 AINLLSATRGNQNPILVHCSAGIGRTGTIVA 280
DUF252: domain 1 of 1, from 263 to 281: score 5.0, E = 1.9
*->PvLiHCnrGkHrTGlVIGc<-*
P+L+HC+ G rTG+ +++
F47B3.1 263 PILVHCSAGIGRTGTIVAI 281
Y_phosphatase: domain 1 of 1, from 93 to 327: score 315.6, E = 5.9e-91
*->NkeKNRykdilpyDhtRVkLk...egsDYINAnyidgpqsrtlvvyk
N +KNRy+d+++ D+ R+++k ++ sDYI+Any+ + +
F47B3.1 93 NTDKNRYQDVPCQDKGRIVVKfpgLASDYIHANYLGT--------AT 131
kpkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtklvEkgreeeKtCaq
+pk++I++QgPl+nT FW M +++kv++++ML++++E g+ +K C+q
F47B3.1 132 NPKKFICAQGPLENTQHSFWAMAIQEKVECVIMLCNCIETGK--IK-CHQ 178
YWPeeggeeggsltyG....ditVtlvseekk..ddddytvRtleltn.g
YWP+ e g++l++G+ ++ i+V + +k+ +d++ ++v+tl++ +++
F47B3.1 179 YWPL---EQGQKLVFGeapnTISVANLGAKKMapDEQCINVTTLKVDWgQ 225
deskneakqeklkgetrtVthyhytgWPDhgvPesgpkslldflrkvrks
+ +rt++h+++ +WPD+gvP + +++l r
F47B3.1 226 G--------------SRTIQHLQWENWPDRGVPQT-NLTAINLLSATRGN 260
qsqenesgeaspdsgprSsctgPivVHCSAGiGRTGtfiaidillqqlea
q+ Pi+VHCSAGiGRTGt++ai ++ ++++a
F47B3.1 261 QN--------------------PILVHCSAGIGRTGTIVAIAYVQDKMMA 290
egvvidifdivkelRsqRpgmVQteeQYiFiydaile<-*
++ ++ + +++kelRs+Rp+++Q+e QY+++++++l
F47B3.1 291 GENCMAMNELIKELRSHRPWSIQNEFQYLYLHRVLLS 327