hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F47G9.4
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Query:  F47G9.4  CE05886   Zinc finger, C3HC4 type (RING finger) status:Partially_confirmed TR:Q20548 protein_id:CAA98481.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
zf-B_box B-box zinc finger                               38.0    6.1e-08   2
zf-C3HC4 Zinc finger, C3HC4 type (RING finger)           16.3    7.2e-05   1
Fz       Fz domain                                        4.5        1.4   1
PI-PLC-X Phosphatidylinositol-specific phospholipase      4.2        5.5   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C3HC4   1/1       8    31 ..     1    34 [.    16.3  7.2e-05
Fz         1/1      66    83 ..     1    19 [.     4.5      1.4
zf-B_box   1/2      68   115 ..     1    48 []    45.7  6.6e-10
zf-B_box   2/2     126   173 ..     5    48 .]    -0.6  5.2e+02
PI-PLC-X   1/1     647   664 ..   136   153 .]     4.2      5.5

Alignments of top-scoring domains:
zf-C3HC4: domain 1 of 1, from 8 to 31: score 16.3, E = 7.2e-05
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsC<-*
                      C IC++e++ep      +l C H+      Cr+C
     F47G9.4     8    CTICKNEFEEPI-----LLSCQHT-----TCRKC    31

Fz: domain 1 of 1, from 66 to 83: score 4.5, E = 1.4
                   *->sgssgestgrCepiteipl<-*
                      s+++ e+++ Ce+i+ +p+
     F47G9.4    66    SKEEMEECANCEQIS-LPM    83

zf-B_box: domain 1 of 2, from 68 to 115: score 45.7, E = 6.6e-10
                   *->ekervCpeHg..eplslfCedDqallCvvCdlsgeHsanklargHtv
                      e+++ C ++++    +++Ce++q++lC vC+ +  H + +++++H +
     F47G9.4    68    EEMEECANCEqiSLPMFYCETCQQSLCLVCRNV-TH-QARMFSSHKI 112

                   vpl<-*
                    +
     F47G9.4   113 ISS    115

zf-B_box: domain 2 of 2, from 126 to 173: score -0.6, E = 5.2e+02
                   *->vCpeHgeplslfCedDqallCvvCdlsg....eHsanklargHtvvp
                      +C  H ep  l+C d ++l C +C+  ++ +++Hs+    +gH+ ++
     F47G9.4   126    LCKDHNEPYILYCSDVRKLVCIQCFNGRpleeRHSFISIEQGHRLCL 172

                   l<-*

     F47G9.4   173 E    173

PI-PLC-X: domain 1 of 1, from 647 to 664: score 4.2, E = 5.5
                   *->pLPslkdlrgKILLknkk<-*
                      pLPsl++l g+I L ++
     F47G9.4   647    PLPSLEQLLGRIPLASRV    664

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