Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F48G7.5
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Query: F48G7.5 CE10762 status:Partially_confirmed TR:O44585 protein_id:AAG24121.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ShTK ShTK domain 94.3 8e-27 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ShTK 1/2 105 147 .. 1 44 [] 56.0 2.6e-15
ShTK 2/2 156 197 .] 1 43 [. 46.3 2.2e-12
Alignments of top-scoring domains:
ShTK: domain 1 of 2, from 105 to 147: score 56.0, E = 2.6e-15
*->tCvDyvDpa...sdCaawaslGefCnnppYyqdfmkenCpkTCGfCs
+C+D+ +pa++ sdC+++++l C++p+ y+ +m e+CpkTCGfC+
F48G7.5 105 PCQDKLNPAtgvSDCPMRRNL---CTDPN-YRKVMHEQCPKTCGFCT 147
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F48G7.5 - -
ShTK: domain 2 of 2, from 156 to 197: score 46.3, E = 2.2e-12
*->tCvDyvDpa...sdCaawaslGefCnnppYyqdfmkenCpkTCGfC<
C D+vDp+++ sdC++ + l C++p+ y+ +mk++CpkTCG+C
F48G7.5 156 ACSDKVDPRtgvSDCPQKKYL---CTDPT-YKGLMKDQCPKTCGYC 197
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F48G7.5 - -