Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F49A5.7
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: F49A5.7 CE16070 Lectin C-type domain short and long forms (2 domains) status:Predicted TR:O45534 protein_id:CAB04419.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
lectin_c Lectin C-type domain 79.4 7.2e-20 3
sic sic protein 1.1 7.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
lectin_c 1/3 34 61 .. 7 40 .. 11.3 0.18
sic 1/1 242 263 .. 1 22 [. 1.1 7.5
lectin_c 2/3 222 334 .. 1 125 [] 45.9 1.7e-10
lectin_c 3/3 357 391 .. 1 40 [. 24.0 9e-05
Alignments of top-scoring domains:
lectin_c: domain 1 of 3, from 34 to 61: score 11.3, E = 0.18
*->eAelaCqkegghAHLvsIqsaeEqsfvvafltsl<-*
+A+++C ++ ++ LvsI+sa E +f++ +
F49A5.7 34 QAQNFCLEKCAN--LVSIHSANEV----RFIMTI 61
sic: domain 1 of 1, from 242 to 263: score 1.1, E = 7.5
*->mniRnKiEnsKtLLFtsLvAvA<-*
iRn En tL F s vA
F49A5.7 242 FSIRNEQENNATLDFVSNSGVA 263
lectin_c: domain 2 of 3, from 222 to 334: score 45.9, E = 1.7e-10
*->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkksnty
kt + A+ C++egg+ L sI+++ E+++ +f+++ y
F49A5.7 222 PGKTRDNADFDCMREGGS-TLFSIRNEQENNATLDFVSNSGV---AY 264
aWIGLt.dintegtwvwegwetdgspvnytenWapgePnnrgnhGgnEdC
+W+GL nt+ +++w +gs ny+ n a+g Pn++ + dC
F49A5.7 265 IWTGLIcNANTSSSCTWDL--KSGSAANYD-NFAKGFPNKTIG-----DC 306
veiytdtdflaGkWnDepCdsklpyvCef<-*
v + ++ +++aG W++ +C++ + yvCe
F49A5.7 307 VYFIAN-GTEAGHWKSSACNQTMSYVCEL 334
lectin_c: domain 3 of 3, from 357 to 391: score 24.0, E = 9e-05
*->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsl<-*
+s t a+A+++C +++g+ +LvsI+sa E+ ++++ l
F49A5.7 357 KSSTIADAQEFCKTKHGG-NLVSINSANEN----RYVQTL 391