Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F49B2.1
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Query:  F49B2.1  CE28559    status:Partially_confirmed TR:O45535 protein_id:CAB04423.2

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
F-box    F-box domain                                    30.5    2.2e-06   1
DUF469   Protein with unknown function (DUF469)           3.9        8.1   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
F-box      1/1       3    50 ..     1    46 []    30.5  2.2e-06
DUF469     1/1      73    87 ..    86   101 ..     3.9      8.1

Alignments of top-scoring domains:
F-box: domain 1 of 1, from 3 to 50: score 30.5, E = 2.2e-06
                   *->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwf.kl
                       ++l+LP ++l+    ++ ++dl+r+s+++ + ++l+  +++ ++ +
     F49B2.1     3    LPILRLPRKCLRLAALHMKFIDLIRFSFTCETAKNLAETFnFPVtGI 49

                   l<-*
                   +
     F49B2.1    50 R    50

DUF469: domain 1 of 1, from 73 to 87: score 3.9, E = 8.1
                   *->kkWLeqqkELaeVevs<-*
                      +kWLe+q  L++V +s
     F49B2.1    73    EKWLEEQD-LEQVYIS    87



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