Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F49B2.1
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Query: F49B2.1 CE28559 status:Partially_confirmed TR:O45535 protein_id:CAB04423.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
F-box F-box domain 30.5 2.2e-06 1
DUF469 Protein with unknown function (DUF469) 3.9 8.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
F-box 1/1 3 50 .. 1 46 [] 30.5 2.2e-06
DUF469 1/1 73 87 .. 86 101 .. 3.9 8.1
Alignments of top-scoring domains:
F-box: domain 1 of 1, from 3 to 50: score 30.5, E = 2.2e-06
*->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwf.kl
++l+LP ++l+ ++ ++dl+r+s+++ + ++l+ +++ ++ +
F49B2.1 3 LPILRLPRKCLRLAALHMKFIDLIRFSFTCETAKNLAETFnFPVtGI 49
l<-*
+
F49B2.1 50 R 50
DUF469: domain 1 of 1, from 73 to 87: score 3.9, E = 8.1
*->kkWLeqqkELaeVevs<-*
+kWLe+q L++V +s
F49B2.1 73 EKWLEEQD-LEQVYIS 87