Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F49E11.10
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Query: F49E11.10 CE05906 testis-specific protein TPX-1 like status:Confirmed TR:Q20603 protein_id:CAA94344.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SCP SCP-like extracellular protein 211.0 1.8e-59 1
granulin Granulin 3.8 8.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SCP 1/1 27 171 .. 1 163 [] 211.0 1.8e-59
granulin 1/1 193 207 .] 28 42 .. 3.8 8.3
Alignments of top-scoring domains:
SCP: domain 1 of 1, from 27 to 171: score 211.0, E = 1.8e-59
*->LdaHNelRsqvAkGtyvakg.nlPpAsnMpkLkWDdeLAalAqnwAn
+aHN+lRs++AkGtyvakg++++p++n++k+kWD+ +Aa+Aqn+An
F49E11.10 27 INAHNTLRSKIAKGTYVAKGtQKSPGTNLLKMKWDSAVAASAQNYAN 73
qmankgdCpgslsHspldrkcrntsrfgpyGENlawgsgssgsgadlgei
C + +Hs ++ ++GENl+w+++ sgs+ dl+ +
F49E11.10 74 G------C--PTGHS----------GDAGLGENLYWYWT-SGSLGDLNQY 104
aaeeavdaWfnElkkdYgynspntct...dgsgcGHyTQmVWakttkiGC
++a +W++E ++dYg++s n +t + +++g+GH+TQm+Wak++ iGC
F49E11.10 105 -GSAASASWEKE-FQDYGWKS-NLMTidlFNTGIGHATQMAWAKSNLIGC 151
avvrCgngggrdnkvyvvCn<-*
+v+ Cg+++++ nkv vvC+
F49E11.10 152 GVKDCGRDSNGLNKVTVVCQ 171
granulin: domain 1 of 1, from 193 to 207: score 3.8, E = 8.3
*->CPqGfhCdadggrCl<-*
CP+G++C++ g C+
F49E11.10 193 CPSGTSCETSTGLCV 207