hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F49E2.5b
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  F49E2.5b  CE31530    status:Confirmed TR:Q20625 protein_id:CAA86429.2

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
DUF612       Protein of unknown function, DUF612        944.5   1.3e-293   7
SUA5         SUA5 domain                                 10.7      0.081   2
Calcipressin Calcipressin                                 4.1          4   1
Bro-N        BRO family, N-terminal domain                3.7        6.6   1
Rad21_Rec8_N N terminus of Rad21 / Rec8 like protein      3.2        8.1   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
Bro-N          1/1      34    44 ..    97   107 .]     3.7      6.6
DUF612         1/7       1   291 [.     1   291 [.   770.6 1.8e-239
Calcipressin   1/1     310   347 ..   238   275 .]     4.1        4
DUF612         2/7     346   382 ..   437   481 ..    21.8  1.9e-06
Rad21_Rec8_N   1/1     400   425 ..   106   136 .]     3.2      8.1
DUF612         3/7     431   454 ..   493   517 .]    -1.9       43
DUF612         4/7     469   547 ..   434   517 .]   158.0  7.5e-49
SUA5           1/2     556   586 ..     1    38 [.     7.6      0.6
DUF612         5/7     548   597 ..   349   390 ..     7.3    0.063
SUA5           2/2     608   629 ..     1    22 [.     7.1     0.85
DUF612         6/7     600   646 ..   349   387 ..     2.3      2.1
DUF612         7/7     704   731 ..   489   517 .]    -2.3       61

Alignments of top-scoring domains:
Bro-N: domain 1 of 1, from 34 to 44: score 3.7, E = 6.6
                   *->FqkWlteevLP<-*
                      F++Wl+  vLP
    F49E2.5b    34    FRQWLLTAVLP    44

DUF612: domain 1 of 7, from 1 to 291: score 770.6, E = 1.8e-239
                   *->mRsPKsvRRPHiRqqLtnRRKnLGRvAKsqRnqFRqWLLtAvLPnsi
                      mRsPKsvRRPHiRqqLtnRRKnLGRvAKsqRnqFRqWLLtAvLPnsi
    F49E2.5b     1    MRSPKSVRRPHIRQQLTNRRKNLGRVAKSQRNQFRQWLLTAVLPNSI 47

                   nDqRKEAFAsLELtEqPqqvEKvKKsEKKKAqKqiAKDHEAEqKvnAKKA
                   nDqRKEAFAsLELtEqPqqvEKvKKsEKKKAqKqiAKDHEAEqKvnAKKA
    F49E2.5b    48 NDQRKEAFASLELTEQPQQVEKVKKSEKKKAQKQIAKDHEAEQKVNAKKA 97

                   AEKEARRAEAEAKKRAAqEEEHKqWKAEqERiqKEqEKKEADLKKLqAEK
                   AEKEARRAEAEAKKRAAqEEEHKqWKAEqERiqKEqEKKEADLKKLqAEK
    F49E2.5b    98 AEKEARRAEAEAKKRAAQEEEHKQWKAEQERIQKEQEKKEADLKKLQAEK 147

                   KKEKAvKAEKAEKAEKtKKAstPAPvEEEivvKKvAnDRsAAPAPEPKtP
                   KKEKAvKAEKAEKAEKtKKAstPAPvEEEivvKKvAnDRsAAPAPEPKtP
    F49E2.5b   148 KKEKAVKAEKAEKAEKTKKASTPAPVEEEIVVKKVANDRSAAPAPEPKTP 197

                   tntPAEPAEqvqEitGKKnKKnKKKsEsEAtAAPAsvEqvvEqPKvvtEE
                   tntPAEPAEqvqEitGKKnKKnKKKsEsEAtAAPAsvEqvvEqPKvvtEE
    F49E2.5b   198 TNTPAEPAEQVQEITGKKNKKNKKKSESEATAAPASVEQVVEQPKVVTEE 247

                   PHqqAAPqEKKnKKnKRKsEsEnvPAAsEtPvEPvvEttPPAsE<-*
                   PHqqAAPqEKKnKKnKRKsEsEnvPAAsEtPvEPvvE   P sE
    F49E2.5b   248 PHQQAAPQEKKNKKNKRKSESENVPAASETPVEPVVENESPESE    291

Calcipressin: domain 1 of 1, from 310 to 347: score 4.1, E = 4
                   *->vceteidgeeaddlidqSgvsdtprpkakivqTarPpr<-*
                      ++ ++i  + ad+ i q +vs ++ +++++v+   P+
    F49E2.5b   310    MGFSDIVTPKADEVITQDPVSAKQEVLPEHVPSEIPEE    347

DUF612: domain 2 of 7, from 346 to 382: score 21.8, E = 1.9e-06
                   *->EkPvqaAPvsKKPtADDsmDFLDFvtAKPeksEvveehieapaiv<-
                      E+Pv    vsKKPtA DsmDFLDFvt K e         eapa+v
    F49E2.5b   346    EEPV---AVSKKPTA-DSMDFLDFVTPKTEAESTS----EAPAPV   382

                   *

    F49E2.5b     -   -

Rad21_Rec8_N: domain 1 of 1, from 400 to 425: score 3.2, E = 8.1
                   *->kkaFrsgqkdfevdlPeenrtarinsnltlP<-*
                      + a+++g     ++ P++++t ++ns + l+
    F49E2.5b   400    HVADVTGN----TLSPSQHSTPSPNS-VLLN    425

DUF612: domain 3 of 7, from 431 to 454: score -1.9, E = 43
                   *->aaenkKKnKKdKkKkesEkaveEsv<-*
                      ++  k   KK+Kk+ +sE   +E+
    F49E2.5b   431    SSKRKHHHKKNKKRTDSEM-SQEPS    454

DUF612: domain 4 of 7, from 469 to 547: score 158.0, E = 7.5e-49
                   *->kavEkPvqaAPvsKKPtADDsmDFLDFvtAKPeksEvveehieapai
                      k vEkPv  APvsKKPtADD+mDFLDFvtAKPek+E+veehieap+i
    F49E2.5b   469    KKVEKPV--APVSKKPTADDNMDFLDFVTAKPEKTESVEEHIEAPMI 513

                   vEvvkveeetAvaaenkKKnKKdKkKkesEkaveEsv<-*
                   vE+v++e+etA+aa++kKKnKK+K+Kk+sE+   Es+
    F49E2.5b   514 VEPVHAENETAAAAGGKKKNKKNKNKKNSES---EST    547

SUA5: domain 1 of 2, from 556 to 586: score 7.6, E = 0.6
                   *->ITvEeiekvlGekilvkvveakkGleeaevpkaPGMKY<-*
                      +T+E +e+v+++k++++ ++a         + aPG K+
    F49E2.5b   556    VTPEIVEEVFEKKTITPSTAA-------AAAPAPGSKK    586

DUF612: domain 5 of 7, from 548 to 597: score 7.3, E = 0.063
                   *->PAA.PvEEvvEnvvEnvvEKsttPPAtEnK.......KKnKKDKKKs
                      PAA+Pv Ev   +vE v EK t  P t     + +++KKnKK KK s
    F49E2.5b   548    PAAePVKEVTPEIVEEVFEKKTITPSTAAAaapapgsKKNKKNKKNS 594

                   EsE<-*
                   EsE
    F49E2.5b   595 ESE    597

SUA5: domain 2 of 2, from 608 to 629: score 7.1, E = 0.85
                   *->ITvEeiekvlGekilvkvveak<-*
                      +T+E +e+v+++k++++ +ea+
    F49E2.5b   608    VTPEIVEEVFEKKTVTPSTEAA    629

	[output cut off at A = 10 top alignments]

[DB home][top]