Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F49E2.5e
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Query: F49E2.5e CE16091 status:Confirmed TR:O45542 protein_id:CAA86425.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF612 Protein of unknown function, DUF612 1380.6 0 2
Bro-N BRO family, N-terminal domain 3.7 6.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Bro-N 1/1 34 44 .. 97 107 .] 3.7 6.6
DUF612 1/2 1 510 [. 1 517 [] 1335.6 0
DUF612 2/2 511 541 .. 441 471 .. 46.1 5e-14
Alignments of top-scoring domains:
Bro-N: domain 1 of 1, from 34 to 44: score 3.7, E = 6.6
*->FqkWlteevLP<-*
F++Wl+ vLP
F49E2.5e 34 FRQWLLTAVLP 44
DUF612: domain 1 of 2, from 1 to 510: score 1335.6, E = 0
*->mRsPKsvRRPHiRqqLtnRRKnLGRvAKsqRnqFRqWLLtAvLPnsi
mRsPKsvRRPHiRqqLtnRRKnLGRvAKsqRnqFRqWLLtAvLPnsi
F49E2.5e 1 MRSPKSVRRPHIRQQLTNRRKNLGRVAKSQRNQFRQWLLTAVLPNSI 47
nDqRKEAFAsLELtEqPqqvEKvKKsEKKKAqKqiAKDHEAEqKvnAKKA
nDqRKEAFAsLELtEqPqqvEKvKKsEKKKAqKqiAKDHEAEqKvnAKKA
F49E2.5e 48 NDQRKEAFASLELTEQPQQVEKVKKSEKKKAQKQIAKDHEAEQKVNAKKA 97
AEKEARRAEAEAKKRAAqEEEHKqWKAEqERiqKEqEKKEADLKKLqAEK
AEKEARRAEAEAKKRAAqEEEHKqWKAEqERiqKEqEKKEADLKKLqAEK
F49E2.5e 98 AEKEARRAEAEAKKRAAQEEEHKQWKAEQERIQKEQEKKEADLKKLQAEK 147
KKEKAvKAEKAEKAEKtKKAstPAPvEEEivvKKvAnDRsAAPAPEPKtP
KKEKAvKAEKAEKAEKtKKAstPAPvEEEivvKKvAnDRsAAPAPEPKtP
F49E2.5e 148 KKEKAVKAEKAEKAEKTKKASTPAPVEEEIVVKKVANDRSAAPAPEPKTP 197
tntPAEPAEqvqEitGKKnKKnKKKsEsEAtAAPAsvEqvvEqPKvvtEE
tntPAEPAEqvqEitGKKnKKnKKKsEsEAtAAPAsvEqvvEqPKvvtEE
F49E2.5e 198 TNTPAEPAEQVQEITGKKNKKNKKKSESEATAAPASVEQVVEQPKVVTEE 247
PHqqAAPqEKKnKKnKRKsEsEnvPAAsEtPvEPvvEttPPAsEnqKKnK
PHqqAAPqEKKnKKnKRKsEsEnvPAAsEtPvEPvvEttPPAsEnqKKnK
F49E2.5e 248 PHQQAAPQEKKNKKNKRKSESENVPAASETPVEPVVETTPPASENQKKNK 297
KDKKKsEsEKvvEEPvqAEAPKsKKPtADDnmDFLDFvtAKEEPKDEPAE
KDKKKsEsEKvvEEPvqAEAPKsKKPtADDnmDFLDFvtAKEEPKDEPAE
F49E2.5e 298 KDKKKSESEKVVEEPVQAEAPKSKKPTADDNMDFLDFVTAKEEPKDEPAE 347
tPAAPvEEvvEnvvEnvvEKsttPPAtEnKKKnKKDKKKsEsEKvtEqPv
tPAAPvEEvvEnvvEnvvEKsttPPAtEnKKKnKKDKKKsEsEKvtEqPv
F49E2.5e 348 TPAAPVEEVVENVVENVVEKSTTPPATENKKKNKKDKKKSESEKVTEQPV 397
EsAPAPPqvEqvvEktppasenkkknkkdkkksesekavEkPvqaAPvsK
EsAPAPPqvEqvvE+tppasenkkknkkdkkksesekavE+PvqaAP+sK
F49E2.5e 398 ESAPAPPQVEQVVETTPPASENKKKNKKDKKKSESEKAVEEPVQAAPSSK 447
KPtADDsmDFLDFvtAKPeksEvveehieapaivEvvkveeetAvaaenk
KPtADDsmDFLDFvtAKP++sEv+ a+vEv+kv+e+tAv++en+
F49E2.5e 448 KPTADDSMDFLDFVTAKPDRSEVA-------APVEVAKVDESTAVTSENR 490
KKnKKdKkKkesEkaveEsv<-*
KKnKKdKkK+esEkaveE+v
F49E2.5e 491 KKNKKDKKKSESEKAVEEPV 510
DUF612: domain 2 of 2, from 511 to 541: score 46.1, E = 5e-14
*->qaAPvsKKPtADDsmDFLDFvtAKPeksEvv<-*
qaAP sKKPtADDsmDFLDFvtAK e+ E v
F49E2.5e 511 QAAPTSKKPTADDSMDFLDFVTAKEERVEEV 541