Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F49E2.5f
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Query:  F49E2.5f  CE16092    status:Partially_confirmed TR:O45543 protein_id:CAA86426.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
DUF612   Protein of unknown function, DUF612           1405.4          0   3
Bro-N    BRO family, N-terminal domain                    3.7        6.6   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Bro-N      1/1      34    44 ..    97   107 .]     3.7      6.6
DUF612     1/3       1   510 [.     1   517 []  1335.6        0
DUF612     2/3     511   541 ..   441   471 ..    46.1    5e-14
DUF612     3/3     542   606 ..   402   489 ..    30.9  2.7e-09

Alignments of top-scoring domains:
Bro-N: domain 1 of 1, from 34 to 44: score 3.7, E = 6.6
                   *->FqkWlteevLP<-*
                      F++Wl+  vLP
    F49E2.5f    34    FRQWLLTAVLP    44

DUF612: domain 1 of 3, from 1 to 510: score 1335.6, E = 0
                   *->mRsPKsvRRPHiRqqLtnRRKnLGRvAKsqRnqFRqWLLtAvLPnsi
                      mRsPKsvRRPHiRqqLtnRRKnLGRvAKsqRnqFRqWLLtAvLPnsi
    F49E2.5f     1    MRSPKSVRRPHIRQQLTNRRKNLGRVAKSQRNQFRQWLLTAVLPNSI 47

                   nDqRKEAFAsLELtEqPqqvEKvKKsEKKKAqKqiAKDHEAEqKvnAKKA
                   nDqRKEAFAsLELtEqPqqvEKvKKsEKKKAqKqiAKDHEAEqKvnAKKA
    F49E2.5f    48 NDQRKEAFASLELTEQPQQVEKVKKSEKKKAQKQIAKDHEAEQKVNAKKA 97

                   AEKEARRAEAEAKKRAAqEEEHKqWKAEqERiqKEqEKKEADLKKLqAEK
                   AEKEARRAEAEAKKRAAqEEEHKqWKAEqERiqKEqEKKEADLKKLqAEK
    F49E2.5f    98 AEKEARRAEAEAKKRAAQEEEHKQWKAEQERIQKEQEKKEADLKKLQAEK 147

                   KKEKAvKAEKAEKAEKtKKAstPAPvEEEivvKKvAnDRsAAPAPEPKtP
                   KKEKAvKAEKAEKAEKtKKAstPAPvEEEivvKKvAnDRsAAPAPEPKtP
    F49E2.5f   148 KKEKAVKAEKAEKAEKTKKASTPAPVEEEIVVKKVANDRSAAPAPEPKTP 197

                   tntPAEPAEqvqEitGKKnKKnKKKsEsEAtAAPAsvEqvvEqPKvvtEE
                   tntPAEPAEqvqEitGKKnKKnKKKsEsEAtAAPAsvEqvvEqPKvvtEE
    F49E2.5f   198 TNTPAEPAEQVQEITGKKNKKNKKKSESEATAAPASVEQVVEQPKVVTEE 247

                   PHqqAAPqEKKnKKnKRKsEsEnvPAAsEtPvEPvvEttPPAsEnqKKnK
                   PHqqAAPqEKKnKKnKRKsEsEnvPAAsEtPvEPvvEttPPAsEnqKKnK
    F49E2.5f   248 PHQQAAPQEKKNKKNKRKSESENVPAASETPVEPVVETTPPASENQKKNK 297

                   KDKKKsEsEKvvEEPvqAEAPKsKKPtADDnmDFLDFvtAKEEPKDEPAE
                   KDKKKsEsEKvvEEPvqAEAPKsKKPtADDnmDFLDFvtAKEEPKDEPAE
    F49E2.5f   298 KDKKKSESEKVVEEPVQAEAPKSKKPTADDNMDFLDFVTAKEEPKDEPAE 347

                   tPAAPvEEvvEnvvEnvvEKsttPPAtEnKKKnKKDKKKsEsEKvtEqPv
                   tPAAPvEEvvEnvvEnvvEKsttPPAtEnKKKnKKDKKKsEsEKvtEqPv
    F49E2.5f   348 TPAAPVEEVVENVVENVVEKSTTPPATENKKKNKKDKKKSESEKVTEQPV 397

                   EsAPAPPqvEqvvEktppasenkkknkkdkkksesekavEkPvqaAPvsK
                   EsAPAPPqvEqvvE+tppasenkkknkkdkkksesekavE+PvqaAP+sK
    F49E2.5f   398 ESAPAPPQVEQVVETTPPASENKKKNKKDKKKSESEKAVEEPVQAAPSSK 447

                   KPtADDsmDFLDFvtAKPeksEvveehieapaivEvvkveeetAvaaenk
                   KPtADDsmDFLDFvtAKP++sEv+       a+vEv+kv+e+tAv++en+
    F49E2.5f   448 KPTADDSMDFLDFVTAKPDRSEVA-------APVEVAKVDESTAVTSENR 490

                   KKnKKdKkKkesEkaveEsv<-*
                   KKnKKdKkK+esEkaveE+v
    F49E2.5f   491 KKNKKDKKKSESEKAVEEPV    510

DUF612: domain 2 of 3, from 511 to 541: score 46.1, E = 5e-14
                   *->qaAPvsKKPtADDsmDFLDFvtAKPeksEvv<-*
                      qaAP sKKPtADDsmDFLDFvtAK e+ E v
    F49E2.5f   511    QAAPTSKKPTADDSMDFLDFVTAKEERVEEV    541

DUF612: domain 3 of 3, from 542 to 606: score 30.9, E = 2.7e-09
                   *->APPqvEqvvEktppasenkkknkkdkkksesekavEkPvqaAPvsKK
                      AP q Eqv E+        kk kk kk sese            sK+
    F49E2.5f   542    APVQ-EQVKEQ--------KKSKKSKKTSESE------------SKR 567

                   PtADDsmDFLDFvtAKPeksEvveehieapaivEvvkveee<-*
                   PtADDsmDFLDFvtAKPek E v    e p++ Ev k ee+
    F49E2.5f   568 PTADDSMDFLDFVTAKPEKPEQV--VEEQPVVQEVPKPEEK    606



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