Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F49E7.1a
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Query: F49E7.1a CE26367 status:Partially_confirmed TR:Q9GYH7 protein_id:AAF98624.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
VPS9 Vacuolar sorting protein 9 (VPS9) domain 93.4 4.5e-24 1
RasGAP GTPase-activator protein for Ras-like GTPase 7.5 0.81 1
ARID ARID/BRIGHT DNA binding domain 5.7 2.9 1
Microcin Colicin E1 (microcin) immunity protein 5.6 5.1 1
Clathrin Region in Clathrin and VPS 5.2 4.6 1
TYA TYA transposon protein 2.6 5.6 1
DUF430 Protein of unknown function (DUF430) 2.0 6.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
RasGAP 1/1 315 330 .. 188 203 .. 7.5 0.81
Clathrin 1/1 362 394 .. 126 158 .] 5.2 4.6
TYA 1/1 571 606 .. 406 440 .] 2.6 5.6
DUF430 1/1 861 881 .. 339 359 .] 2.0 6.5
Microcin 1/1 863 893 .. 24 55 .] 5.6 5.1
ARID 1/1 908 928 .. 1 21 [. 5.7 2.9
VPS9 1/1 1006 1108 .. 1 116 [. 93.4 4.5e-24
Alignments of top-scoring domains:
RasGAP: domain 1 of 1, from 315 to 330: score 7.5, E = 0.81
*->FinPAIvsPdlfnIid<-*
+i+PAI+sP+ f+ +d
F49E7.1a 315 LICPAIISPQKFGVVD 330
Clathrin: domain 1 of 1, from 362 to 394: score 5.2, E = 4.6
*->yqkavdyavkrnnpelwaevlkacldkkrflla<-*
++ +++++++++n+ l +e++ a+l +k ++
F49E7.1a 362 PEEYKEFLSQCRNTHLISEMMDALLVEKLAPDV 394
TYA: domain 1 of 1, from 571 to 606: score 2.6, E = 5.6
*->SskfsrvdNDsIskST.vesiyLsddndLsLrqetk<-*
Ss + ++ + s ST+v++ L +L + +
F49E7.1a 571 SSGSAETNSEHLSDSTsVSPEPLTSTEELQIGDQGV 606
DUF430: domain 1 of 1, from 861 to 881: score 2.0, E = 6.5
*->LrrrLgdkelvrrriaarive<-*
L+rrL+++ lv ++++ + +
F49E7.1a 861 LNRRLTEQILVDFLMRTFLET 881
Microcin: domain 1 of 1, from 863 to 893: score 5.6, E = 5.1
*->kyaiEhialkfikkeFfvkrKNlnseppaKlg<-*
+++ E i f + F +++ N n+ +++K++
F49E7.1a 863 RRLTEQILVDFLMRTFLETGFN-NKHTVGKTQ 893
ARID: domain 1 of 1, from 908 to 928: score 5.7, E = 2.9
*->eaqtrerkeFldrLikFmekr<-*
++ + er+eFl+ L+ F+++r
F49E7.1a 908 LRAQDERAEFLKNLLTFLRDR 928
VPS9: domain 1 of 1, from 1006 to 1108: score 93.4, E = 4.5e-24
*->fleeakqeLrelqYeyysPrdKlqcllkvcklifnalkltkgenaaP
++++a+ eL l+ y + +dKl+c+ ++c +i n+ l ++ a
F49E7.1a 1006 PWPSAQAELSMLD-IYVTAQDKLNCVVRCCDVINNLVALSSKN--A- 1048
DPmCYRqlsADdFLPvLiYvvlkanpphLlsnveYisrFlnpPisRlLsG
++sADd+ PvL++v++kanp+ Llsnv++++ F++ +R sG
F49E7.1a 1049 ------VASADDLTPVLVFVIIKANPRALLSNVQFVETFAG---DRIESG 1089
EagYYLTsLeaAleFiktl<-*
++YY+ ++++A+e ikt+
F49E7.1a 1090 RDAYYWVNFKSAVEYIKTI 1108