Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F49F1.1
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Query: F49F1.1 CE17084 status:Partially_confirmed TR:Q9GZE5 protein_id:AAF99968.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ShTK ShTK domain 120.0 1.6e-34 5
squash Squash family serine protease inhibitor 4.5 0.94 1
Baculo_VP39 Baculovirus major capsid protein VP39 2.1 8.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ShTK 1/5 17 49 .. 1 44 [] 31.2 7.5e-08
squash 1/1 24 56 .. 1 30 [] 4.5 0.94
ShTK 2/5 54 86 .. 1 44 [] 24.8 6.3e-06
ShTK 3/5 88 119 .. 1 44 [] 23.2 2e-05
Baculo_VP39 1/1 142 154 .. 29 41 .. 2.1 8.8
ShTK 4/5 136 167 .. 1 44 [] 26.2 2.3e-06
ShTK 5/5 227 265 .] 1 43 [. 45.4 4.1e-12
Alignments of top-scoring domains:
ShTK: domain 1 of 5, from 17 to 49: score 31.2, E = 7.5e-08
*->tCvDyvDpasdCaawaslGefCnnppYyqdfmkenCpkTCGfCs<-*
tC+ D ++dC+ ++ + C ++++++ +C+ +CG+C+
F49F1.1 17 TCM---DFMIDCPRIVYY---C-----DETYVQNQCQFSCGICK 49
squash: domain 1 of 1, from 24 to 56: score 4.5, E = 0.94
*->riCPrilmeCkr...DsDClaeC.vCleegeyCG<-*
CPri+ C ++ + C C++C+++ + CG
F49F1.1 24 -DCPRIVYYCDEtyvQNQCQFSCgICKQDPGVCG 56
ShTK: domain 2 of 5, from 54 to 86: score 24.8, E = 6.3e-06
*->tCvDyvDpasdCaawaslGefCnnppYyqdfmkenCpkTCGfCs<-*
C D++ dC ++ Cn+p +++C+ TCG+C+
F49F1.1 54 VCG---DTYFDCDMYDTK---CNSPS-----FQRQCAGTCGLCP 86
ShTK: domain 3 of 5, from 88 to 119: score 23.2, E = 2e-05
*->tCvDyvDpasdCaawaslGefCnnppYyqdfmkenCpkTCGfCs<-*
C+ D + C+++ + C+ d +k+ Cp CG+C+
F49F1.1 88 ACE---DIWDGCSHFLAP---CS------DDIKSLCPIKCGLCN 119
Baculo_VP39: domain 1 of 1, from 142 to 154: score 2.1, E = 8.8
*->dnCrtYtsPCSpD<-*
++C++Y++PCS+D
F49F1.1 142 NQCANYSPPCSDD 154
ShTK: domain 4 of 5, from 136 to 167: score 26.2, E = 2.3e-06
*->tCvDyvDpasdCaawaslGefCnnppYyqdfmkenCpkTCGfCs<-*
Cv D+ + Ca++ + C+ d +k +Cp TCG Cs
F49F1.1 136 RCV---DAGNQCANYSPP---CS------DDVKIFCPATCGSCS 167
ShTK: domain 5 of 5, from 227 to 265: score 45.4, E = 4.1e-12
*->tCvDyvDpasdCaawaslGefCnnppYyqdfmkenCpkTCGfC<-*
+C D++++Ca wa++G+ C+n +Y + +ke+C kTC++C
F49F1.1 227 PCK---DSSPNCAGWAKNGF-CTNTFYPPEKRKEYCGKTCRMC 265