hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F52E1.10
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Query:  F52E1.10  CE04638   ATPase status:Partially_confirmed SW:Q20666 protein_id:AAB37043.1

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N
--------   -----------                                  -----    ------- ---
V-ATPase_H V-ATPase subunit H                           896.1     1e-265   1
DUF158     Uncharacterized LmbE-like protein, COG2120     2.4        8.3   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
DUF158       1/1     380   392 ..     1    18 [.     2.4      8.3
V-ATPase_H   1/1       9   406 ..     1   438 []   896.1   1e-265

Alignments of top-scoring domains:
DUF158: domain 1 of 1, from 380 to 392: score 2.4, E = 8.3
                   *->ssenrLkdAkkVLavhAH<-*
                       s ++L     VL+v AH
    F52E1.10   380    KSNDPL-----VLCVAAH    392

V-ATPase_H: domain 1 of 1, from 9 to 406: score 896.1, E = 1e-265
                   *->miadtshlqeiasevRarkiNWqsYlRSqmIseeDydfIkaleqaks
                      +i+  +h+q++a++vRa+k+NW++++R++mI+++DydfI++++qa++
    F52E1.10     9    LIR--THFQKEADKVRAMKTNWGLFTRTRMIAQSDYDFIVTYQQAEN 53

                   keeradvLsanndatSGFKVNGkaaktflnLlShiskddtVqYvLtLiDD
                   ++er++vLs++++         ka+++f++L+S+iskdd+V+Y+LtLiDD
    F52E1.10    54 EAERSTVLSVFKE---------KAVYAFVHLMSQISKDDYVRYTLTLIDD 94

                   mLqeDksRvsiFkdaAaklkrtiwqlFlglLnRqDqfivhmtarIiAKLA
                   mL+eD++R++iF+d+A++lkr+++++F+glL+RqDq+ivh+t++I++K+A
    F52E1.10    95 MLREDVTRTIIFEDVAVLLKRSPFSFFMGLLHRQDQYIVHITFSILTKMA 144

                   cwGpelmeksdLnyylnfLkeqLqsqstnndYiqtvaRCLQmmLrvdEYR
                   ++G++++++++L+y++++Lke++++ +tnndYi+t++RC+Q+++r+d+YR
    F52E1.10   145 VFGNIKLSGDELDYCMGSLKEAMNR-GTNNDYIVTAVRCMQTLFRFDPYR 193

                   DVIWLHEKKFmPTLFKIfafvaedGvstliaaLlrsnkvgfQLQYqliFc
                                    ++fv+++G+++l++aL++++k+gfQ+QYq+iFc
    F52E1.10   194 -----------------VSFVNINGYDSLTHALYSTRKCGFQIQYQIIFC 226

                   iWlLTFNphiANekaqkrfnlIpiLsdILsestKEKVtRIvLAifrNlie
                   +WlLTFN+h+A e+a +++nlI+++s+IL++++KEKV+RIv++++rNli+
    F52E1.10   227 MWLLTFNGHAA-EVA-LSGNLIQTISGILGNCQKEKVIRIVVSTLRNLIT 274

                   kaqdqevkKeaalaMvQckvLKqLqlLeqRKydDEDlteDvkfLtEeLee
                   ++qd+++kK+aal+M+Q++++++L++Le+RK++D+Dl+eD+++L++eL++
    F52E1.10   275 SNQDVYMKKQAALQMIQNRIPTKLDHLENRKFTDVDLVEDMVYLQTELKK 324

                   svQdLSSFDEYasELrSGrLeWSPvHKSekFWrENAkRLNeknYeLLKiL
                   +vQ+L+SFDEY++ELr+G+L+WSP+HK+e+FW+ENA+RLN++++eLLK+L
    F52E1.10   325 VVQVLTSFDEYENELRQGSLHWSPAHKCEVFWNENAHRLNDNRQELLKLL 374

                   vhLLEkKVRNGDVNAseDpiiLaVAchDiGeYVRhYPRGKs<-*
                   v++LEk         s+Dp++L+VA+hDiGe+VR+YPRGK
    F52E1.10   375 VAMLEK---------SNDPLVLCVAAHDIGEFVRYYPRGKL    406

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