Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F52E4.1a
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Query: F52E4.1a CE07269 propionyl-CoA carboxylase beta status:Confirmed TR:Q20676 protein_id:AAB54030.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Carboxyl_trans Carboxyl transferase domain 1011.7 1.6e-300 1
NusG Transcription termination factor nusG 6.9 3 1
STAT STAT protein, all-alpha domain 6.4 1.2 1
Alpha_core Alphavirus core protein 3.3 6.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
STAT 1/1 94 124 .. 178 208 .] 6.4 1.2
Alpha_core 1/1 460 488 .. 131 159 .] 3.3 6.1
NusG 1/1 495 512 .. 31 48 .] 6.9 3
Carboxyl_trans 1/1 41 534 .. 1 594 [] 1011.7 1.6e-300
Alignments of top-scoring domains:
STAT: domain 1 of 1, from 94 to 124: score 6.4, E = 1.2
*->qkvtYegDpiekqrahLeervtellrnLvks<-*
qk +Y+gD ++ +r++ ++r+++++++ ++
F52E4.1a 94 QKEKYPGDSVVTGRGEINGRTVFVFSQDFTV 124
Alpha_core: domain 1 of 1, from 460 to 488: score 3.3, E = 6.1
*->garTALSVVtWNkkgvtvkttpEgteews<-*
ga+ A S+ N k +v +E te s
F52E4.1a 460 GAKGAVSILFRNDKEHAVQHEEEYTELFS 488
NusG: domain 1 of 1, from 495 to 512: score 6.9, E = 3
*->meDvifqVlvPtEekeeV<-*
++++++++++P+E + +V
F52E4.1a 495 VRGFVDDIIIPSETRKKV 512
Carboxyl_trans: domain 1 of 1, from 41 to 534: score 1011.7, E = 1.6e-300
*->lnkagmgggekavkTkqhpkGkltareRidlLldpGSpFgEledlaf
++ka+ ggg+k+v+ +qh++GkltareRidlLld + F+E++++a+
F52E4.1a 41 REKALLGGGKKRVD-AQHARGKLTARERIDLLLDRNT-FREYDMFAE 85
hrvtefglqadkrglpgdGVvTGsGtidGravevfaqDftvfGGslgpah
h +++fg+q k+++pgd+VvTG+G i+Gr+v+vf+qDftvfGGsl+ +h
F52E4.1a 86 HTCNDFGMQ--KEKYPGDSVVTGRGEINGRTVFVFSQDFTVFGGSLSSIH 133
gekYlYitramelAikansVatehvveesGaPliginDSGGAedggPRiq
++k i+++m++A+ + GaP+ig+nDSGGA Riq
F52E4.1a 134 AKK---IVKIMREAMLV------------GAPVIGLNDSGGA-----RIQ 163
eGvesLaGyGlIFgansraSgvIPQIslimGpcaGGGaYsPaLtdfvimV
eGvesLaGy++IF++n++aSgv+PQIs+imGpcaGG++YsPaLtdf++mV
F52E4.1a 164 EGVESLAGYADIFQENVMASGVVPQISMIMGPCAGGAVYSPALTDFTFMV 213
kdptspmFlTGPdvikkVtGrEevtseeLGGadtHmsksGvaHltaedde
+d ts++F+TGPdv+k+Vt Eevt+eeLGGa+tH+ +sGvaH ++++d
F52E4.1a 214 RD-TSYLFITGPDVVKAVTN-EEVTQEELGGAKTHTVTSGVAHGAFDNDV 261
dAlalirkllSyLPkkrsnnmeppPivetgDppdrsveelrtdDLlvsiv
dAl++ r+l++yLP +n++ +Pi+ + Dp+dr v++l+ ++v
F52E4.1a 262 DALMSLRELFNYLP---LSNTDAAPIRAAEDPWDRAVPSLD------TVV 302
PddpnkpYDvRevIarivDedgkkflGlFDegeFlEvkagyAknvVtGfA
P +++++Y++++v++++vD eg+F+E++++yAkn+V+GfA
F52E4.1a 303 PLESTAAYNMKDVVHALVD-----------EGDFFEIMPDYAKNLVIGFA 341
RlgGrpVGvvANqprtvEnviPADPAnpdSkEavivlAGQvLdidSadKa
R++Gr+VG+v+N+p+ +AG +Ldi+S++K+
F52E4.1a 342 RMNGRTVGIVGNNPK--------------------FAAG-CLDINSSVKG 370
ArFirfCdagfnIPLviLvDvpGFlpGtdqEygGIirhGAkllyAlaeAt
ArF+rfCda fnIP+++LvDvpGFlpGt+qEygGIirhGAkllyA+aeAt
F52E4.1a 371 ARFVRFCDA-FNIPIITLVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEAT 419
VPkitvItrmgkayGGAyvVMdskilgaDlveMYfawPtAeiAVMGpeGA
VPkit+Itr ka+GGAy+VM+sk+l+ D++ +awPtAe+AVMG++GA
F52E4.1a 420 VPKITIITR--KAFGGAYDVMSSKHLRGDIN---YAWPTAEVAVMGAKGA 464
veIlfrkelaaaamerlDptykdlealLeklseaqedrkqkiaeyeeqla
v+Ilfr++ +++ + q+++ey e+++
F52E4.1a 465 VSILFRND----------------KEH----------AVQHEEEYTELFS 488
npyvaaargfvDdvIdPaetRaklvialallwtkrrrffpwrkhgni<-*
np+ aa+rgfvDd+I P+etR+k++ l++l++k++ ++pw+khgni
F52E4.1a 489 NPFPAAVRGFVDDIIIPSETRKKVCEDLNMLESKKL-KNPWKKHGNI 534